Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0923 and EX28DRAFT_0924 are separated by 104 nucleotides EX28DRAFT_0924 and EX28DRAFT_0925 are separated by 56 nucleotides EX28DRAFT_0925 and EX28DRAFT_0926 are separated by 25 nucleotides EX28DRAFT_0926 and EX28DRAFT_0927 are separated by 282 nucleotides
EX28DRAFT_0923: EX28DRAFT_0923 - Acyl-CoA hydrolase, at 924,156 to 924,551
_0923
EX28DRAFT_0924: EX28DRAFT_0924 - intracellular septation protein A, at 924,656 to 925,195
_0924
EX28DRAFT_0925: EX28DRAFT_0925 - Uncharacterised protein family (UPF0259), at 925,252 to 925,995
_0925
EX28DRAFT_0926: EX28DRAFT_0926 - Predicted Fe-S-cluster oxidoreductase, at 926,021 to 926,425
_0926
EX28DRAFT_0927: EX28DRAFT_0927 - Outer membrane protein W, at 926,708 to 927,340
_0927
Position (kb) 925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 924.267 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.294 kb on - strand, within EX28DRAFT_0923 at 924.438 kb on - strand, within EX28DRAFT_0923 at 924.558 kb on - strand at 924.589 kb on + strand at 924.589 kb on + strand at 924.590 kb on - strand at 924.615 kb on - strand at 924.679 kb on + strand at 924.687 kb on + strand at 924.688 kb on - strand at 924.688 kb on - strand at 924.693 kb on + strand at 924.693 kb on + strand at 924.693 kb on + strand at 924.694 kb on - strand at 924.719 kb on - strand, within EX28DRAFT_0924 at 925.215 kb on - strand at 925.265 kb on - strand at 925.265 kb on - strand at 925.265 kb on - strand at 925.270 kb on - strand at 925.270 kb on - strand at 925.270 kb on - strand at 925.270 kb on - strand at 925.270 kb on - strand at 925.271 kb on + strand at 925.271 kb on + strand at 925.272 kb on - strand at 925.272 kb on - strand at 925.540 kb on + strand, within EX28DRAFT_0925 at 925.541 kb on - strand, within EX28DRAFT_0925 at 925.541 kb on - strand, within EX28DRAFT_0925 at 925.564 kb on - strand, within EX28DRAFT_0925 at 925.615 kb on - strand, within EX28DRAFT_0925 at 925.909 kb on + strand, within EX28DRAFT_0925 at 925.910 kb on - strand, within EX28DRAFT_0925 at 925.910 kb on - strand, within EX28DRAFT_0925 at 925.910 kb on - strand, within EX28DRAFT_0925 at 925.910 kb on - strand, within EX28DRAFT_0925 at 925.910 kb on - strand, within EX28DRAFT_0925 at 925.990 kb on - strand at 926.090 kb on - strand, within EX28DRAFT_0926 at 926.417 kb on - strand at 926.479 kb on - strand at 926.650 kb on - strand at 926.650 kb on - strand at 926.653 kb on - strand at 926.666 kb on + strand at 926.736 kb on + strand at 926.736 kb on + strand at 926.739 kb on + strand at 926.788 kb on + strand, within EX28DRAFT_0927 at 926.807 kb on - strand, within EX28DRAFT_0927 at 926.857 kb on + strand, within EX28DRAFT_0927 at 926.857 kb on + strand, within EX28DRAFT_0927 at 926.857 kb on + strand, within EX28DRAFT_0927 at 926.880 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.897 kb on + strand, within EX28DRAFT_0927 at 926.898 kb on - strand, within EX28DRAFT_0927 at 926.898 kb on - strand, within EX28DRAFT_0927 at 926.900 kb on - strand, within EX28DRAFT_0927
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 924,267 - EX28DRAFT_0923 0.28 -1.8 924,294 - EX28DRAFT_0923 0.35 +1.4 924,294 - EX28DRAFT_0923 0.35 -1.0 924,294 - EX28DRAFT_0923 0.35 -0.2 924,294 - EX28DRAFT_0923 0.35 +0.6 924,438 - EX28DRAFT_0923 0.71 -0.0 924,558 - -0.8 924,589 + -0.2 924,589 + -0.1 924,590 - +2.7 924,615 - -0.9 924,679 + -0.7 924,687 + +0.2 924,688 - -0.8 924,688 - +0.4 924,693 + -1.6 924,693 + -0.6 924,693 + -0.4 924,694 - +1.5 924,719 - EX28DRAFT_0924 0.12 -2.0 925,215 - +2.5 925,265 - -0.4 925,265 - +0.8 925,265 - +1.1 925,270 - -3.3 925,270 - +1.3 925,270 - +1.0 925,270 - +1.4 925,270 - +1.5 925,271 + +1.0 925,271 + +1.2 925,272 - +1.2 925,272 - +2.1 925,540 + EX28DRAFT_0925 0.39 +1.2 925,541 - EX28DRAFT_0925 0.39 +1.4 925,541 - EX28DRAFT_0925 0.39 +0.9 925,564 - EX28DRAFT_0925 0.42 +1.4 925,615 - EX28DRAFT_0925 0.49 +1.1 925,909 + EX28DRAFT_0925 0.88 +1.5 925,910 - EX28DRAFT_0925 0.88 +1.3 925,910 - EX28DRAFT_0925 0.88 +1.6 925,910 - EX28DRAFT_0925 0.88 +1.8 925,910 - EX28DRAFT_0925 0.88 +1.7 925,910 - EX28DRAFT_0925 0.88 +1.8 925,990 - +2.0 926,090 - EX28DRAFT_0926 0.17 +0.9 926,417 - -0.2 926,479 - +0.3 926,650 - +0.4 926,650 - -0.1 926,653 - +0.3 926,666 + -0.6 926,736 + +0.0 926,736 + -0.5 926,739 + +0.1 926,788 + EX28DRAFT_0927 0.13 +0.7 926,807 - EX28DRAFT_0927 0.16 -0.9 926,857 + EX28DRAFT_0927 0.24 +0.6 926,857 + EX28DRAFT_0927 0.24 -0.4 926,857 + EX28DRAFT_0927 0.24 -0.1 926,880 + EX28DRAFT_0927 0.27 -0.4 926,897 + EX28DRAFT_0927 0.30 +0.5 926,897 + EX28DRAFT_0927 0.30 -0.3 926,897 + EX28DRAFT_0927 0.30 +0.2 926,897 + EX28DRAFT_0927 0.30 +0.1 926,898 - EX28DRAFT_0927 0.30 -0.3 926,898 - EX28DRAFT_0927 0.30 -0.2 926,900 - EX28DRAFT_0927 0.30 -0.5
Or see this region's nucleotide sequence