Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0846

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0845 and EX28DRAFT_0846 overlap by 4 nucleotidesEX28DRAFT_0846 and EX28DRAFT_0847 are separated by 47 nucleotides EX28DRAFT_0845: EX28DRAFT_0845 - nitrite reductase [NAD(P)H], large subunit/nitrite reductase [NAD(P)H], small subunit, at 848,309 to 852,295 _0845 EX28DRAFT_0846: EX28DRAFT_0846 - Anaerobic dehydrogenases, typically selenocysteine-containing, at 852,292 to 854,817 _0846 EX28DRAFT_0847: EX28DRAFT_0847 - Protein of unknown function (DUF3442), at 854,865 to 856,271 _0847 Position (kb) 852 853 854 855Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 851.603 kb on + strand, within EX28DRAFT_0845at 851.603 kb on + strand, within EX28DRAFT_0845at 851.603 kb on + strand, within EX28DRAFT_0845at 851.709 kb on - strand, within EX28DRAFT_0845at 851.709 kb on - strand, within EX28DRAFT_0845at 852.155 kb on + strandat 852.607 kb on + strand, within EX28DRAFT_0846at 852.608 kb on - strand, within EX28DRAFT_0846at 852.608 kb on - strand, within EX28DRAFT_0846at 852.608 kb on - strand, within EX28DRAFT_0846at 852.608 kb on - strand, within EX28DRAFT_0846at 852.608 kb on - strand, within EX28DRAFT_0846at 852.611 kb on - strand, within EX28DRAFT_0846at 852.701 kb on - strand, within EX28DRAFT_0846at 852.958 kb on - strand, within EX28DRAFT_0846at 853.029 kb on + strand, within EX28DRAFT_0846at 853.031 kb on + strand, within EX28DRAFT_0846at 853.032 kb on - strand, within EX28DRAFT_0846at 853.032 kb on - strand, within EX28DRAFT_0846at 853.032 kb on - strand, within EX28DRAFT_0846at 853.043 kb on - strand, within EX28DRAFT_0846at 853.054 kb on - strand, within EX28DRAFT_0846at 853.081 kb on + strand, within EX28DRAFT_0846at 853.081 kb on + strand, within EX28DRAFT_0846at 853.900 kb on + strand, within EX28DRAFT_0846at 853.945 kb on - strand, within EX28DRAFT_0846at 853.977 kb on + strand, within EX28DRAFT_0846at 853.978 kb on - strand, within EX28DRAFT_0846at 854.284 kb on + strand, within EX28DRAFT_0846at 854.284 kb on + strand, within EX28DRAFT_0846at 854.284 kb on + strand, within EX28DRAFT_0846at 854.285 kb on - strand, within EX28DRAFT_0846at 854.285 kb on - strand, within EX28DRAFT_0846at 854.285 kb on - strand, within EX28DRAFT_0846at 854.389 kb on + strand, within EX28DRAFT_0846at 854.390 kb on - strand, within EX28DRAFT_0846at 854.820 kb on + strandat 854.820 kb on + strandat 854.831 kb on + strandat 854.832 kb on - strandat 854.851 kb on + strandat 854.856 kb on - strandat 854.872 kb on + strandat 854.873 kb on - strandat 854.896 kb on + strandat 854.896 kb on + strandat 854.897 kb on - strandat 854.897 kb on - strandat 854.897 kb on - strandat 854.899 kb on + strandat 854.899 kb on + strandat 854.948 kb on + strandat 854.976 kb on - strandat 854.979 kb on - strandat 855.218 kb on - strand, within EX28DRAFT_0847at 855.400 kb on - strand, within EX28DRAFT_0847at 855.483 kb on + strand, within EX28DRAFT_0847at 855.483 kb on + strand, within EX28DRAFT_0847at 855.484 kb on - strand, within EX28DRAFT_0847at 855.484 kb on - strand, within EX28DRAFT_0847at 855.484 kb on - strand, within EX28DRAFT_0847at 855.537 kb on - strand, within EX28DRAFT_0847at 855.618 kb on + strand, within EX28DRAFT_0847at 855.618 kb on + strand, within EX28DRAFT_0847at 855.696 kb on + strand, within EX28DRAFT_0847at 855.696 kb on + strand, within EX28DRAFT_0847at 855.696 kb on + strand, within EX28DRAFT_0847at 855.697 kb on - strand, within EX28DRAFT_0847at 855.697 kb on - strand, within EX28DRAFT_0847at 855.697 kb on - strand, within EX28DRAFT_0847at 855.765 kb on - strand, within EX28DRAFT_0847at 855.765 kb on - strand, within EX28DRAFT_0847

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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851,603 + EX28DRAFT_0845 0.83 +0.5
851,603 + EX28DRAFT_0845 0.83 +0.2
851,603 + EX28DRAFT_0845 0.83 +0.6
851,709 - EX28DRAFT_0845 0.85 -0.0
851,709 - EX28DRAFT_0845 0.85 -0.1
852,155 + +0.2
852,607 + EX28DRAFT_0846 0.12 -0.2
852,608 - EX28DRAFT_0846 0.13 +0.1
852,608 - EX28DRAFT_0846 0.13 +0.0
852,608 - EX28DRAFT_0846 0.13 -0.0
852,608 - EX28DRAFT_0846 0.13 +0.2
852,608 - EX28DRAFT_0846 0.13 -0.8
852,611 - EX28DRAFT_0846 0.13 +0.2
852,701 - EX28DRAFT_0846 0.16 -0.5
852,958 - EX28DRAFT_0846 0.26 -0.8
853,029 + EX28DRAFT_0846 0.29 +0.4
853,031 + EX28DRAFT_0846 0.29 +0.3
853,032 - EX28DRAFT_0846 0.29 +0.9
853,032 - EX28DRAFT_0846 0.29 +0.5
853,032 - EX28DRAFT_0846 0.29 +0.3
853,043 - EX28DRAFT_0846 0.30 -0.9
853,054 - EX28DRAFT_0846 0.30 -0.9
853,081 + EX28DRAFT_0846 0.31 +0.0
853,081 + EX28DRAFT_0846 0.31 -0.7
853,900 + EX28DRAFT_0846 0.64 -0.1
853,945 - EX28DRAFT_0846 0.65 -2.3
853,977 + EX28DRAFT_0846 0.67 +1.4
853,978 - EX28DRAFT_0846 0.67 -2.9
854,284 + EX28DRAFT_0846 0.79 -0.1
854,284 + EX28DRAFT_0846 0.79 -2.5
854,284 + EX28DRAFT_0846 0.79 +0.0
854,285 - EX28DRAFT_0846 0.79 +0.2
854,285 - EX28DRAFT_0846 0.79 +0.7
854,285 - EX28DRAFT_0846 0.79 -0.9
854,389 + EX28DRAFT_0846 0.83 -0.2
854,390 - EX28DRAFT_0846 0.83 -0.2
854,820 + -1.9
854,820 + -0.1
854,831 + +0.8
854,832 - +0.2
854,851 + +0.5
854,856 - -0.6
854,872 + -0.3
854,873 - -0.5
854,896 + -1.1
854,896 + +0.0
854,897 - +1.8
854,897 - +0.8
854,897 - -0.3
854,899 + +0.4
854,899 + -1.0
854,948 + -0.3
854,976 - +0.9
854,979 - -2.5
855,218 - EX28DRAFT_0847 0.25 +1.3
855,400 - EX28DRAFT_0847 0.38 +0.0
855,483 + EX28DRAFT_0847 0.44 +0.8
855,483 + EX28DRAFT_0847 0.44 -0.7
855,484 - EX28DRAFT_0847 0.44 -0.0
855,484 - EX28DRAFT_0847 0.44 -0.1
855,484 - EX28DRAFT_0847 0.44 +0.3
855,537 - EX28DRAFT_0847 0.48 -0.7
855,618 + EX28DRAFT_0847 0.54 +0.7
855,618 + EX28DRAFT_0847 0.54 -0.8
855,696 + EX28DRAFT_0847 0.59 +1.0
855,696 + EX28DRAFT_0847 0.59 -0.2
855,696 + EX28DRAFT_0847 0.59 +0.6
855,697 - EX28DRAFT_0847 0.59 -0.2
855,697 - EX28DRAFT_0847 0.59 +0.9
855,697 - EX28DRAFT_0847 0.59 +0.1
855,765 - EX28DRAFT_0847 0.64 -1.3
855,765 - EX28DRAFT_0847 0.64 -0.1

Or see this region's nucleotide sequence