Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0788 and EX28DRAFT_0789 are separated by 17 nucleotides EX28DRAFT_0789 and EX28DRAFT_0790 are separated by 2 nucleotides
EX28DRAFT_0788: EX28DRAFT_0788 - type VI secretion protein, VC_A0114 family, at 787,000 to 788,343
_0788
EX28DRAFT_0789: EX28DRAFT_0789 - type VI secretion system peptidoglycan-associated domain, at 788,361 to 789,599
_0789
EX28DRAFT_0790: EX28DRAFT_0790 - type VI secretion protein IcmF, at 789,602 to 793,222
_0790
Position (kb) 788
789
790 Strain fitness (log2 ratio) -2
-1
0
1
2 at 787.525 kb on - strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.555 kb on + strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.556 kb on - strand, within EX28DRAFT_0788 at 787.695 kb on + strand, within EX28DRAFT_0788 at 787.752 kb on - strand, within EX28DRAFT_0788 at 787.864 kb on + strand, within EX28DRAFT_0788 at 788.155 kb on - strand, within EX28DRAFT_0788 at 788.213 kb on - strand at 788.257 kb on - strand at 788.342 kb on - strand at 788.344 kb on + strand at 788.345 kb on - strand at 788.345 kb on - strand at 788.357 kb on + strand at 788.360 kb on + strand at 788.360 kb on + strand at 788.360 kb on + strand at 788.361 kb on - strand at 788.503 kb on + strand, within EX28DRAFT_0789 at 788.756 kb on + strand, within EX28DRAFT_0789 at 788.781 kb on + strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 788.782 kb on - strand, within EX28DRAFT_0789 at 789.012 kb on + strand, within EX28DRAFT_0789 at 789.024 kb on - strand, within EX28DRAFT_0789 at 789.070 kb on - strand, within EX28DRAFT_0789 at 789.070 kb on - strand, within EX28DRAFT_0789 at 789.598 kb on - strand at 789.598 kb on - strand at 789.745 kb on + strand at 789.748 kb on + strand at 789.749 kb on - strand at 789.767 kb on + strand at 789.768 kb on - strand at 789.768 kb on - strand at 789.807 kb on - strand at 789.807 kb on - strand at 790.010 kb on + strand, within EX28DRAFT_0790 at 790.010 kb on + strand, within EX28DRAFT_0790 at 790.017 kb on - strand, within EX28DRAFT_0790 at 790.031 kb on + strand, within EX28DRAFT_0790 at 790.032 kb on - strand, within EX28DRAFT_0790 at 790.039 kb on + strand, within EX28DRAFT_0790 at 790.207 kb on + strand, within EX28DRAFT_0790 at 790.208 kb on - strand, within EX28DRAFT_0790 at 790.273 kb on + strand, within EX28DRAFT_0790 at 790.274 kb on - strand, within EX28DRAFT_0790 at 790.274 kb on - strand, within EX28DRAFT_0790 at 790.430 kb on + strand, within EX28DRAFT_0790 at 790.557 kb on - strand, within EX28DRAFT_0790
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 787,525 - EX28DRAFT_0788 0.39 +0.5 787,555 + EX28DRAFT_0788 0.41 -0.3 787,555 + EX28DRAFT_0788 0.41 -0.1 787,556 - EX28DRAFT_0788 0.41 +0.5 787,556 - EX28DRAFT_0788 0.41 +0.5 787,556 - EX28DRAFT_0788 0.41 +1.2 787,695 + EX28DRAFT_0788 0.52 -0.2 787,752 - EX28DRAFT_0788 0.56 +0.7 787,864 + EX28DRAFT_0788 0.64 -0.0 788,155 - EX28DRAFT_0788 0.86 +0.1 788,213 - +1.8 788,257 - +1.4 788,342 - +0.2 788,344 + +0.1 788,345 - +0.7 788,345 - -0.1 788,357 + -0.4 788,360 + +0.5 788,360 + -0.9 788,360 + +0.0 788,361 - +0.5 788,503 + EX28DRAFT_0789 0.11 +0.2 788,756 + EX28DRAFT_0789 0.32 +0.1 788,781 + EX28DRAFT_0789 0.34 +1.3 788,782 - EX28DRAFT_0789 0.34 +0.8 788,782 - EX28DRAFT_0789 0.34 +0.3 788,782 - EX28DRAFT_0789 0.34 +1.2 788,782 - EX28DRAFT_0789 0.34 -0.0 789,012 + EX28DRAFT_0789 0.53 -0.2 789,024 - EX28DRAFT_0789 0.54 +1.1 789,070 - EX28DRAFT_0789 0.57 +0.7 789,070 - EX28DRAFT_0789 0.57 +0.3 789,598 - -2.2 789,598 - +1.9 789,745 + -0.5 789,748 + +0.1 789,749 - +0.1 789,767 + -0.1 789,768 - +0.7 789,768 - +1.5 789,807 - -0.2 789,807 - +0.5 790,010 + EX28DRAFT_0790 0.11 +0.3 790,010 + EX28DRAFT_0790 0.11 +0.1 790,017 - EX28DRAFT_0790 0.11 +0.2 790,031 + EX28DRAFT_0790 0.12 +0.0 790,032 - EX28DRAFT_0790 0.12 -0.8 790,039 + EX28DRAFT_0790 0.12 +0.4 790,207 + EX28DRAFT_0790 0.17 -0.1 790,208 - EX28DRAFT_0790 0.17 -0.4 790,273 + EX28DRAFT_0790 0.19 -0.2 790,274 - EX28DRAFT_0790 0.19 -0.0 790,274 - EX28DRAFT_0790 0.19 +0.4 790,430 + EX28DRAFT_0790 0.23 +0.6 790,557 - EX28DRAFT_0790 0.26 +0.6
Or see this region's nucleotide sequence