Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0723 and EX28DRAFT_0724 are separated by 132 nucleotides EX28DRAFT_0724 and EX28DRAFT_0725 are separated by 96 nucleotides EX28DRAFT_0725 and EX28DRAFT_0726 are separated by 19 nucleotides
EX28DRAFT_0723: EX28DRAFT_0723 - integral membrane protein, PqiA family, at 721,457 to 722,740
_0723
EX28DRAFT_0724: EX28DRAFT_0724 - GAF domain-containing protein, at 722,873 to 723,370
_0724
EX28DRAFT_0725: EX28DRAFT_0725 - Activator of osmoprotectant transporter ProP, at 723,467 to 724,153
_0725
EX28DRAFT_0726: EX28DRAFT_0726 - C-terminal peptidase (prc), at 724,173 to 726,221
_0726
Position (kb) 723
724
725 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 722.467 kb on - strand, within EX28DRAFT_0723 at 722.473 kb on + strand, within EX28DRAFT_0723 at 722.473 kb on + strand, within EX28DRAFT_0723 at 722.474 kb on - strand, within EX28DRAFT_0723 at 722.626 kb on + strand at 722.627 kb on - strand at 722.689 kb on + strand at 722.699 kb on + strand at 722.756 kb on - strand at 722.756 kb on - strand at 722.759 kb on + strand at 722.759 kb on + strand at 722.772 kb on + strand at 722.777 kb on + strand at 722.823 kb on - strand at 722.859 kb on + strand at 723.268 kb on + strand, within EX28DRAFT_0724 at 723.321 kb on + strand at 723.369 kb on - strand at 723.384 kb on + strand at 723.384 kb on + strand at 723.406 kb on + strand at 723.407 kb on - strand at 723.408 kb on + strand at 723.452 kb on + strand at 723.452 kb on + strand at 723.481 kb on + strand at 723.658 kb on + strand, within EX28DRAFT_0725 at 723.681 kb on - strand, within EX28DRAFT_0725 at 723.880 kb on + strand, within EX28DRAFT_0725 at 724.054 kb on + strand, within EX28DRAFT_0725 at 724.583 kb on + strand, within EX28DRAFT_0726
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 722,467 - EX28DRAFT_0723 0.79 +0.1 722,473 + EX28DRAFT_0723 0.79 -0.3 722,473 + EX28DRAFT_0723 0.79 -0.7 722,474 - EX28DRAFT_0723 0.79 -1.5 722,626 + +0.5 722,627 - -1.6 722,689 + +0.4 722,699 + +0.6 722,756 - +0.5 722,756 - +0.1 722,759 + -0.2 722,759 + +0.0 722,772 + +0.4 722,777 + -1.0 722,823 - -0.5 722,859 + +0.5 723,268 + EX28DRAFT_0724 0.79 +0.2 723,321 + +0.0 723,369 - -0.7 723,384 + -2.5 723,384 + -0.3 723,406 + +0.7 723,407 - -2.3 723,408 + -2.3 723,452 + -0.8 723,452 + +0.0 723,481 + -2.6 723,658 + EX28DRAFT_0725 0.28 -0.5 723,681 - EX28DRAFT_0725 0.31 -2.8 723,880 + EX28DRAFT_0725 0.60 -1.4 724,054 + EX28DRAFT_0725 0.85 -2.1 724,583 + EX28DRAFT_0726 0.20 -2.3
Or see this region's nucleotide sequence