Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0686 and EX28DRAFT_0687 overlap by 4 nucleotides EX28DRAFT_0687 and EX28DRAFT_0688 are separated by 40 nucleotides EX28DRAFT_0688 and EX28DRAFT_0689 are separated by 51 nucleotides EX28DRAFT_0689 and EX28DRAFT_0690 overlap by 4 nucleotides
EX28DRAFT_0686: EX28DRAFT_0686 - tRNA (mo5U34)-methyltransferase, at 684,897 to 685,868
_0686
EX28DRAFT_0687: EX28DRAFT_0687 - tRNA (cmo5U34)-methyltransferase, at 685,865 to 686,608
_0687
EX28DRAFT_0688: EX28DRAFT_0688 - Uncharacterized relative of glutathione S-transferase, MAPEG superfamily, at 686,649 to 687,044
_0688
EX28DRAFT_0689: EX28DRAFT_0689 - Uncharacterized conserved protein, at 687,096 to 687,914
_0689
EX28DRAFT_0690: EX28DRAFT_0690 - Amidases related to nicotinamidase, at 687,911 to 688,477
_0690
Position (kb) 686
687
688 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 686.041 kb on - strand, within EX28DRAFT_0687 at 686.482 kb on + strand, within EX28DRAFT_0687 at 686.482 kb on + strand, within EX28DRAFT_0687 at 686.483 kb on - strand, within EX28DRAFT_0687 at 686.640 kb on + strand at 686.641 kb on - strand at 686.681 kb on + strand at 686.681 kb on + strand at 686.682 kb on - strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.683 kb on + strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.684 kb on - strand at 686.780 kb on - strand, within EX28DRAFT_0688 at 686.780 kb on - strand, within EX28DRAFT_0688 at 686.801 kb on + strand, within EX28DRAFT_0688 at 686.855 kb on + strand, within EX28DRAFT_0688 at 686.872 kb on - strand, within EX28DRAFT_0688 at 687.019 kb on - strand at 687.044 kb on + strand at 687.044 kb on + strand at 687.045 kb on - strand at 687.080 kb on - strand at 687.227 kb on - strand, within EX28DRAFT_0689 at 687.799 kb on + strand, within EX28DRAFT_0689 at 687.799 kb on + strand, within EX28DRAFT_0689 at 687.800 kb on - strand, within EX28DRAFT_0689 at 687.801 kb on + strand, within EX28DRAFT_0689 at 687.801 kb on + strand, within EX28DRAFT_0689 at 687.801 kb on + strand, within EX28DRAFT_0689 at 687.802 kb on - strand, within EX28DRAFT_0689 at 687.802 kb on - strand, within EX28DRAFT_0689 at 687.802 kb on - strand, within EX28DRAFT_0689 at 687.842 kb on - strand at 687.842 kb on - strand at 687.907 kb on + strand at 687.908 kb on - strand at 687.908 kb on - strand at 687.967 kb on + strand at 687.967 kb on + strand at 688.037 kb on - strand, within EX28DRAFT_0690 at 688.037 kb on - strand, within EX28DRAFT_0690
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 686,041 - EX28DRAFT_0687 0.24 -0.1 686,482 + EX28DRAFT_0687 0.83 +0.6 686,482 + EX28DRAFT_0687 0.83 -0.5 686,483 - EX28DRAFT_0687 0.83 +0.0 686,640 + -0.6 686,641 - -1.3 686,681 + +1.1 686,681 + -0.2 686,682 - +0.3 686,683 + -3.0 686,683 + -1.8 686,683 + +1.2 686,683 + +0.2 686,684 - -0.4 686,684 - -0.3 686,684 - +0.2 686,684 - -0.1 686,780 - EX28DRAFT_0688 0.33 -0.8 686,780 - EX28DRAFT_0688 0.33 -0.5 686,801 + EX28DRAFT_0688 0.38 +0.4 686,855 + EX28DRAFT_0688 0.52 -1.1 686,872 - EX28DRAFT_0688 0.56 +0.4 687,019 - -0.2 687,044 + +0.9 687,044 + -0.2 687,045 - -0.7 687,080 - -0.0 687,227 - EX28DRAFT_0689 0.16 +0.0 687,799 + EX28DRAFT_0689 0.86 +1.4 687,799 + EX28DRAFT_0689 0.86 +0.4 687,800 - EX28DRAFT_0689 0.86 +0.1 687,801 + EX28DRAFT_0689 0.86 -0.4 687,801 + EX28DRAFT_0689 0.86 -0.5 687,801 + EX28DRAFT_0689 0.86 +0.2 687,802 - EX28DRAFT_0689 0.86 -0.4 687,802 - EX28DRAFT_0689 0.86 -0.3 687,802 - EX28DRAFT_0689 0.86 +0.4 687,842 - +0.0 687,842 - -0.0 687,907 + -0.7 687,908 - -0.1 687,908 - +0.1 687,967 + -0.9 687,967 + +0.1 688,037 - EX28DRAFT_0690 0.22 -1.4 688,037 - EX28DRAFT_0690 0.22 -0.1
Or see this region's nucleotide sequence