Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0630

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0628 and EX28DRAFT_0629 are separated by 21 nucleotidesEX28DRAFT_0629 and EX28DRAFT_0630 overlap by 4 nucleotidesEX28DRAFT_0630 and EX28DRAFT_0631 are separated by 221 nucleotides EX28DRAFT_0628: EX28DRAFT_0628 - D-cysteine desulfhydrase (EC 4.4.1.15), at 625,277 to 626,263 _0628 EX28DRAFT_0629: EX28DRAFT_0629 - amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family, at 626,285 to 626,953 _0629 EX28DRAFT_0630: EX28DRAFT_0630 - ABC-type polar amino acid transport system, ATPase component, at 626,950 to 627,702 _0630 EX28DRAFT_0631: EX28DRAFT_0631 - DNA-binding HTH domain-containing proteins, at 627,924 to 628,646 _0631 Position (kb) 626 627 628Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 625.977 kb on + strand, within EX28DRAFT_0628at 625.977 kb on + strand, within EX28DRAFT_0628at 626.042 kb on + strand, within EX28DRAFT_0628at 626.042 kb on + strand, within EX28DRAFT_0628at 626.042 kb on + strand, within EX28DRAFT_0628at 626.043 kb on - strand, within EX28DRAFT_0628at 626.343 kb on + strandat 626.348 kb on - strandat 626.348 kb on - strandat 626.410 kb on - strand, within EX28DRAFT_0629at 626.457 kb on - strand, within EX28DRAFT_0629at 626.457 kb on - strand, within EX28DRAFT_0629at 626.457 kb on - strand, within EX28DRAFT_0629at 626.458 kb on + strand, within EX28DRAFT_0629at 626.458 kb on + strand, within EX28DRAFT_0629at 626.459 kb on - strand, within EX28DRAFT_0629at 626.500 kb on + strand, within EX28DRAFT_0629at 626.500 kb on + strand, within EX28DRAFT_0629at 626.507 kb on + strand, within EX28DRAFT_0629at 626.507 kb on + strand, within EX28DRAFT_0629at 626.507 kb on + strand, within EX28DRAFT_0629at 626.508 kb on - strand, within EX28DRAFT_0629at 626.588 kb on + strand, within EX28DRAFT_0629at 626.588 kb on + strand, within EX28DRAFT_0629at 626.761 kb on + strand, within EX28DRAFT_0629at 626.762 kb on - strand, within EX28DRAFT_0629at 626.762 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 626.850 kb on - strand, within EX28DRAFT_0629at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.094 kb on - strand, within EX28DRAFT_0630at 627.097 kb on - strand, within EX28DRAFT_0630at 627.186 kb on - strand, within EX28DRAFT_0630at 627.268 kb on - strand, within EX28DRAFT_0630at 627.287 kb on + strand, within EX28DRAFT_0630at 627.288 kb on - strand, within EX28DRAFT_0630at 627.339 kb on + strand, within EX28DRAFT_0630at 627.371 kb on - strand, within EX28DRAFT_0630at 627.732 kb on + strandat 627.806 kb on - strandat 627.815 kb on - strandat 627.869 kb on + strandat 627.870 kb on - strandat 627.870 kb on - strandat 627.870 kb on - strandat 627.870 kb on - strandat 627.875 kb on - strandat 627.876 kb on + strandat 627.885 kb on + strandat 627.886 kb on - strandat 627.888 kb on + strandat 627.889 kb on - strandat 627.896 kb on - strandat 627.896 kb on - strandat 627.896 kb on - strandat 627.917 kb on - strandat 627.919 kb on + strandat 627.920 kb on - strandat 627.920 kb on - strandat 627.920 kb on - strandat 627.920 kb on - strandat 627.923 kb on + strandat 627.924 kb on - strandat 627.924 kb on - strandat 627.924 kb on - strandat 628.000 kb on + strand, within EX28DRAFT_0631at 628.000 kb on + strand, within EX28DRAFT_0631at 628.000 kb on + strand, within EX28DRAFT_0631at 628.000 kb on + strand, within EX28DRAFT_0631at 628.001 kb on - strand, within EX28DRAFT_0631at 628.013 kb on - strand, within EX28DRAFT_0631at 628.013 kb on - strand, within EX28DRAFT_0631at 628.079 kb on + strand, within EX28DRAFT_0631at 628.088 kb on + strand, within EX28DRAFT_0631at 628.110 kb on + strand, within EX28DRAFT_0631at 628.110 kb on + strand, within EX28DRAFT_0631at 628.134 kb on + strand, within EX28DRAFT_0631at 628.240 kb on + strand, within EX28DRAFT_0631at 628.241 kb on - strand, within EX28DRAFT_0631at 628.241 kb on - strand, within EX28DRAFT_0631at 628.241 kb on - strand, within EX28DRAFT_0631at 628.248 kb on - strand, within EX28DRAFT_0631at 628.268 kb on - strand, within EX28DRAFT_0631at 628.302 kb on - strand, within EX28DRAFT_0631at 628.334 kb on + strand, within EX28DRAFT_0631at 628.337 kb on + strand, within EX28DRAFT_0631at 628.337 kb on + strand, within EX28DRAFT_0631at 628.342 kb on + strand, within EX28DRAFT_0631at 628.342 kb on + strand, within EX28DRAFT_0631at 628.342 kb on + strand, within EX28DRAFT_0631at 628.343 kb on - strand, within EX28DRAFT_0631at 628.442 kb on + strand, within EX28DRAFT_0631at 628.442 kb on + strand, within EX28DRAFT_0631at 628.550 kb on + strand, within EX28DRAFT_0631at 628.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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625,977 + EX28DRAFT_0628 0.71 -0.5
625,977 + EX28DRAFT_0628 0.71 -0.7
626,042 + EX28DRAFT_0628 0.78 +0.6
626,042 + EX28DRAFT_0628 0.78 +0.3
626,042 + EX28DRAFT_0628 0.78 +0.0
626,043 - EX28DRAFT_0628 0.78 -0.7
626,343 + +0.4
626,348 - -2.5
626,348 - +0.3
626,410 - EX28DRAFT_0629 0.19 +2.3
626,457 - EX28DRAFT_0629 0.26 +0.5
626,457 - EX28DRAFT_0629 0.26 +0.3
626,457 - EX28DRAFT_0629 0.26 +0.8
626,458 + EX28DRAFT_0629 0.26 -0.2
626,458 + EX28DRAFT_0629 0.26 -0.3
626,459 - EX28DRAFT_0629 0.26 +0.2
626,500 + EX28DRAFT_0629 0.32 -1.0
626,500 + EX28DRAFT_0629 0.32 +0.8
626,507 + EX28DRAFT_0629 0.33 -2.8
626,507 + EX28DRAFT_0629 0.33 +0.5
626,507 + EX28DRAFT_0629 0.33 -0.9
626,508 - EX28DRAFT_0629 0.33 -0.2
626,588 + EX28DRAFT_0629 0.45 -0.9
626,588 + EX28DRAFT_0629 0.45 +0.5
626,761 + EX28DRAFT_0629 0.71 +1.2
626,762 - EX28DRAFT_0629 0.71 -0.1
626,762 - EX28DRAFT_0629 0.71 +0.5
626,850 - EX28DRAFT_0629 0.84 +0.5
626,850 - EX28DRAFT_0629 0.84 +0.3
626,850 - EX28DRAFT_0629 0.84 +0.2
626,850 - EX28DRAFT_0629 0.84 -0.5
626,850 - EX28DRAFT_0629 0.84 +0.5
626,850 - EX28DRAFT_0629 0.84 +0.4
627,094 - EX28DRAFT_0630 0.19 +0.1
627,094 - EX28DRAFT_0630 0.19 -1.3
627,094 - EX28DRAFT_0630 0.19 +0.1
627,094 - EX28DRAFT_0630 0.19 +0.7
627,097 - EX28DRAFT_0630 0.20 -0.5
627,186 - EX28DRAFT_0630 0.31 +0.9
627,268 - EX28DRAFT_0630 0.42 -1.5
627,287 + EX28DRAFT_0630 0.45 +0.1
627,288 - EX28DRAFT_0630 0.45 -1.0
627,339 + EX28DRAFT_0630 0.52 +0.4
627,371 - EX28DRAFT_0630 0.56 -0.3
627,732 + -1.3
627,806 - +0.1
627,815 - -2.1
627,869 + -0.7
627,870 - -0.2
627,870 - +0.3
627,870 - -0.3
627,870 - -0.5
627,875 - +0.3
627,876 + +0.0
627,885 + +0.3
627,886 - -0.7
627,888 + -0.2
627,889 - -0.2
627,896 - -0.3
627,896 - -1.5
627,896 - -0.8
627,917 - +0.2
627,919 + +0.1
627,920 - -1.1
627,920 - +0.4
627,920 - -0.9
627,920 - -0.3
627,923 + +0.1
627,924 - -0.2
627,924 - -0.5
627,924 - +0.2
628,000 + EX28DRAFT_0631 0.11 -0.7
628,000 + EX28DRAFT_0631 0.11 -0.6
628,000 + EX28DRAFT_0631 0.11 -0.8
628,000 + EX28DRAFT_0631 0.11 -0.1
628,001 - EX28DRAFT_0631 0.11 -0.4
628,013 - EX28DRAFT_0631 0.12 +0.1
628,013 - EX28DRAFT_0631 0.12 +0.0
628,079 + EX28DRAFT_0631 0.21 -0.4
628,088 + EX28DRAFT_0631 0.23 -0.5
628,110 + EX28DRAFT_0631 0.26 +0.5
628,110 + EX28DRAFT_0631 0.26 +0.8
628,134 + EX28DRAFT_0631 0.29 -1.4
628,240 + EX28DRAFT_0631 0.44 -0.4
628,241 - EX28DRAFT_0631 0.44 -0.5
628,241 - EX28DRAFT_0631 0.44 -1.6
628,241 - EX28DRAFT_0631 0.44 -1.3
628,248 - EX28DRAFT_0631 0.45 +0.1
628,268 - EX28DRAFT_0631 0.48 -1.2
628,302 - EX28DRAFT_0631 0.52 -0.2
628,334 + EX28DRAFT_0631 0.57 -0.5
628,337 + EX28DRAFT_0631 0.57 -0.6
628,337 + EX28DRAFT_0631 0.57 +0.3
628,342 + EX28DRAFT_0631 0.58 +1.0
628,342 + EX28DRAFT_0631 0.58 -0.8
628,342 + EX28DRAFT_0631 0.58 -2.4
628,343 - EX28DRAFT_0631 0.58 -0.6
628,442 + EX28DRAFT_0631 0.72 -0.5
628,442 + EX28DRAFT_0631 0.72 -0.2
628,550 + EX28DRAFT_0631 0.87 -1.3
628,656 - -0.1

Or see this region's nucleotide sequence