Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0607

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0605 and EX28DRAFT_0606 are separated by 9 nucleotidesEX28DRAFT_0606 and EX28DRAFT_0607 overlap by 1 nucleotidesEX28DRAFT_0607 and EX28DRAFT_0608 are separated by 2 nucleotidesEX28DRAFT_0608 and EX28DRAFT_0609 overlap by 4 nucleotides EX28DRAFT_0605: EX28DRAFT_0605 - flagellar biosynthetic protein FliQ, at 605,609 to 605,878 _0605 EX28DRAFT_0606: EX28DRAFT_0606 - flagellar biosynthetic protein FliP, at 605,888 to 606,625 _0606 EX28DRAFT_0607: EX28DRAFT_0607 - flagellar biosynthetic protein FliO, at 606,625 to 606,999 _0607 EX28DRAFT_0608: EX28DRAFT_0608 - flagellar motor switch protein FliN, at 607,002 to 607,415 _0608 EX28DRAFT_0609: EX28DRAFT_0609 - flagellar motor switch protein FliM, at 607,412 to 608,416 _0609 Position (kb) 606 607Strain fitness (log2 ratio) -2 -1 0 1at 605.635 kb on + strandat 605.650 kb on + strand, within EX28DRAFT_0605at 605.650 kb on + strand, within EX28DRAFT_0605at 605.651 kb on - strand, within EX28DRAFT_0605at 605.651 kb on - strand, within EX28DRAFT_0605at 605.651 kb on - strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.652 kb on + strand, within EX28DRAFT_0605at 605.653 kb on - strand, within EX28DRAFT_0605at 605.653 kb on - strand, within EX28DRAFT_0605at 605.653 kb on - strand, within EX28DRAFT_0605at 605.770 kb on + strand, within EX28DRAFT_0605at 605.770 kb on + strand, within EX28DRAFT_0605at 605.889 kb on + strandat 605.889 kb on + strandat 605.890 kb on - strandat 605.946 kb on - strandat 605.962 kb on + strand, within EX28DRAFT_0606at 605.963 kb on - strand, within EX28DRAFT_0606at 605.963 kb on - strand, within EX28DRAFT_0606at 606.105 kb on + strand, within EX28DRAFT_0606at 606.106 kb on - strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.214 kb on + strand, within EX28DRAFT_0606at 606.215 kb on - strand, within EX28DRAFT_0606at 606.300 kb on + strand, within EX28DRAFT_0606at 606.300 kb on + strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.467 kb on - strand, within EX28DRAFT_0606at 606.481 kb on + strand, within EX28DRAFT_0606at 606.567 kb on + strandat 606.567 kb on + strandat 606.568 kb on - strandat 606.568 kb on - strandat 606.726 kb on + strand, within EX28DRAFT_0607at 606.726 kb on + strand, within EX28DRAFT_0607at 606.727 kb on - strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.730 kb on + strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.731 kb on - strand, within EX28DRAFT_0607at 606.733 kb on + strand, within EX28DRAFT_0607at 606.734 kb on - strand, within EX28DRAFT_0607at 606.734 kb on - strand, within EX28DRAFT_0607at 606.744 kb on + strand, within EX28DRAFT_0607at 606.744 kb on + strand, within EX28DRAFT_0607at 606.906 kb on + strand, within EX28DRAFT_0607at 606.906 kb on + strand, within EX28DRAFT_0607at 606.916 kb on - strand, within EX28DRAFT_0607at 606.916 kb on - strand, within EX28DRAFT_0607at 606.979 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.022 kb on + strandat 607.023 kb on - strandat 607.053 kb on - strand, within EX28DRAFT_0608at 607.056 kb on + strand, within EX28DRAFT_0608at 607.063 kb on + strand, within EX28DRAFT_0608at 607.063 kb on + strand, within EX28DRAFT_0608at 607.064 kb on - strand, within EX28DRAFT_0608at 607.191 kb on - strand, within EX28DRAFT_0608at 607.347 kb on + strand, within EX28DRAFT_0608at 607.541 kb on - strand, within EX28DRAFT_0609at 607.583 kb on + strand, within EX28DRAFT_0609at 607.846 kb on + strand, within EX28DRAFT_0609at 607.853 kb on - strand, within EX28DRAFT_0609at 607.921 kb on + strand, within EX28DRAFT_0609at 607.922 kb on - strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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605,635 + +0.2
605,650 + EX28DRAFT_0605 0.15 -0.1
605,650 + EX28DRAFT_0605 0.15 +0.1
605,651 - EX28DRAFT_0605 0.16 +0.5
605,651 - EX28DRAFT_0605 0.16 -0.6
605,651 - EX28DRAFT_0605 0.16 -0.5
605,652 + EX28DRAFT_0605 0.16 -0.3
605,652 + EX28DRAFT_0605 0.16 -0.4
605,652 + EX28DRAFT_0605 0.16 +0.2
605,652 + EX28DRAFT_0605 0.16 +0.2
605,653 - EX28DRAFT_0605 0.16 -0.4
605,653 - EX28DRAFT_0605 0.16 -0.9
605,653 - EX28DRAFT_0605 0.16 -0.1
605,770 + EX28DRAFT_0605 0.60 -0.7
605,770 + EX28DRAFT_0605 0.60 -0.2
605,889 + +0.9
605,889 + +0.3
605,890 - -0.1
605,946 - +1.0
605,962 + EX28DRAFT_0606 0.10 +0.4
605,963 - EX28DRAFT_0606 0.10 +0.1
605,963 - EX28DRAFT_0606 0.10 +0.1
606,105 + EX28DRAFT_0606 0.29 -1.1
606,106 - EX28DRAFT_0606 0.30 +0.2
606,214 + EX28DRAFT_0606 0.44 +0.0
606,214 + EX28DRAFT_0606 0.44 -1.1
606,214 + EX28DRAFT_0606 0.44 +0.2
606,214 + EX28DRAFT_0606 0.44 +0.2
606,215 - EX28DRAFT_0606 0.44 -1.0
606,300 + EX28DRAFT_0606 0.56 +1.1
606,300 + EX28DRAFT_0606 0.56 +1.1
606,467 - EX28DRAFT_0606 0.78 -1.6
606,467 - EX28DRAFT_0606 0.78 +0.0
606,467 - EX28DRAFT_0606 0.78 +0.1
606,481 + EX28DRAFT_0606 0.80 -0.2
606,567 + -0.5
606,567 + -0.1
606,568 - +0.5
606,568 - +0.3
606,726 + EX28DRAFT_0607 0.27 -0.5
606,726 + EX28DRAFT_0607 0.27 -0.3
606,727 - EX28DRAFT_0607 0.27 -0.1
606,730 + EX28DRAFT_0607 0.28 -0.2
606,730 + EX28DRAFT_0607 0.28 -0.7
606,730 + EX28DRAFT_0607 0.28 -0.5
606,730 + EX28DRAFT_0607 0.28 -0.2
606,731 - EX28DRAFT_0607 0.28 -0.1
606,731 - EX28DRAFT_0607 0.28 -0.3
606,731 - EX28DRAFT_0607 0.28 -0.1
606,731 - EX28DRAFT_0607 0.28 -1.3
606,731 - EX28DRAFT_0607 0.28 -0.4
606,731 - EX28DRAFT_0607 0.28 -0.6
606,733 + EX28DRAFT_0607 0.29 -0.5
606,734 - EX28DRAFT_0607 0.29 +0.1
606,734 - EX28DRAFT_0607 0.29 -0.1
606,744 + EX28DRAFT_0607 0.32 -0.8
606,744 + EX28DRAFT_0607 0.32 -0.6
606,906 + EX28DRAFT_0607 0.75 -0.1
606,906 + EX28DRAFT_0607 0.75 +0.3
606,916 - EX28DRAFT_0607 0.78 +0.0
606,916 - EX28DRAFT_0607 0.78 +0.1
606,979 + -2.2
607,022 + +0.1
607,022 + -0.5
607,022 + -1.2
607,022 + +0.1
607,022 + -0.4
607,023 - +0.1
607,053 - EX28DRAFT_0608 0.12 -0.2
607,056 + EX28DRAFT_0608 0.13 -0.6
607,063 + EX28DRAFT_0608 0.15 +0.2
607,063 + EX28DRAFT_0608 0.15 -1.4
607,064 - EX28DRAFT_0608 0.15 +0.1
607,191 - EX28DRAFT_0608 0.46 +0.3
607,347 + EX28DRAFT_0608 0.83 -0.7
607,541 - EX28DRAFT_0609 0.13 +1.0
607,583 + EX28DRAFT_0609 0.17 +0.3
607,846 + EX28DRAFT_0609 0.43 -0.8
607,853 - EX28DRAFT_0609 0.44 -0.9
607,921 + EX28DRAFT_0609 0.51 -0.2
607,922 - EX28DRAFT_0609 0.51 -0.7
607,923 + EX28DRAFT_0609 0.51 +0.0
607,923 + EX28DRAFT_0609 0.51 -1.7
607,924 - EX28DRAFT_0609 0.51 +0.7
607,924 - EX28DRAFT_0609 0.51 +1.2
607,924 - EX28DRAFT_0609 0.51 +0.5
607,924 - EX28DRAFT_0609 0.51 +0.3
607,924 - EX28DRAFT_0609 0.51 -0.2
607,924 - EX28DRAFT_0609 0.51 +0.5
607,924 - EX28DRAFT_0609 0.51 -0.2
607,924 - EX28DRAFT_0609 0.51 +0.7
607,994 + EX28DRAFT_0609 0.58 -0.5
607,994 + EX28DRAFT_0609 0.58 -0.2
607,994 + EX28DRAFT_0609 0.58 +0.2
607,994 + EX28DRAFT_0609 0.58 +0.3

Or see this region's nucleotide sequence