Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0599 and EX28DRAFT_0600 are separated by 205 nucleotides EX28DRAFT_0600 and EX28DRAFT_0601 are separated by 9 nucleotides EX28DRAFT_0601 and EX28DRAFT_0602 are separated by 129 nucleotides EX28DRAFT_0602 and EX28DRAFT_0603 are separated by 101 nucleotides
EX28DRAFT_0599: EX28DRAFT_0599 - mannosyl-3-phosphoglycerate phosphatase-related protein, at 602,149 to 602,949
_0599
EX28DRAFT_0600: EX28DRAFT_0600 - RNA, at 603,155 to 603,241
_0600
EX28DRAFT_0601: EX28DRAFT_0601 - Protein of unknown function (DUF2525), at 603,251 to 603,478
_0601
EX28DRAFT_0602: EX28DRAFT_0602 - Dextransucrase DSRB, at 603,608 to 603,796
_0602
EX28DRAFT_0603: EX28DRAFT_0603 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 603,898 to 604,521
_0603
Position (kb) 603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 602.619 kb on + strand, within EX28DRAFT_0599 at 602.711 kb on - strand, within EX28DRAFT_0599 at 602.836 kb on - strand, within EX28DRAFT_0599 at 602.879 kb on + strand at 602.879 kb on + strand at 602.879 kb on + strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.880 kb on - strand at 602.931 kb on + strand at 602.931 kb on + strand at 602.932 kb on - strand at 603.110 kb on - strand at 603.115 kb on + strand at 603.117 kb on + strand at 603.145 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.157 kb on + strand at 603.158 kb on - strand at 603.158 kb on - strand at 603.158 kb on - strand at 603.202 kb on + strand, within EX28DRAFT_0600 at 603.275 kb on - strand, within EX28DRAFT_0601 at 603.318 kb on + strand, within EX28DRAFT_0601 at 603.319 kb on - strand, within EX28DRAFT_0601 at 603.460 kb on - strand at 603.511 kb on + strand at 603.515 kb on + strand at 603.515 kb on + strand at 603.516 kb on - strand at 603.518 kb on - strand at 603.578 kb on + strand at 603.579 kb on - strand at 603.607 kb on + strand at 603.607 kb on + strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.608 kb on - strand at 603.705 kb on - strand, within EX28DRAFT_0602 at 603.795 kb on - strand at 603.876 kb on - strand at 603.891 kb on + strand at 603.970 kb on - strand, within EX28DRAFT_0603 at 603.970 kb on - strand, within EX28DRAFT_0603 at 603.993 kb on + strand, within EX28DRAFT_0603 at 603.996 kb on + strand, within EX28DRAFT_0603 at 604.032 kb on + strand, within EX28DRAFT_0603 at 604.033 kb on - strand, within EX28DRAFT_0603 at 604.114 kb on + strand, within EX28DRAFT_0603 at 604.156 kb on - strand, within EX28DRAFT_0603 at 604.206 kb on + strand, within EX28DRAFT_0603 at 604.305 kb on + strand, within EX28DRAFT_0603 at 604.365 kb on + strand, within EX28DRAFT_0603 at 604.365 kb on + strand, within EX28DRAFT_0603 at 604.384 kb on + strand, within EX28DRAFT_0603 at 604.447 kb on + strand, within EX28DRAFT_0603 at 604.490 kb on + strand at 604.498 kb on + strand at 604.498 kb on + strand at 604.527 kb on - strand at 604.549 kb on + strand at 604.604 kb on + strand at 604.605 kb on - strand at 604.742 kb on + strand at 604.742 kb on + strand at 604.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 602,619 + EX28DRAFT_0599 0.59 -0.2 602,711 - EX28DRAFT_0599 0.70 +0.1 602,836 - EX28DRAFT_0599 0.86 -0.3 602,879 + -0.2 602,879 + +0.5 602,879 + +0.5 602,880 - +0.3 602,880 - -1.1 602,880 - +0.1 602,880 - +0.5 602,931 + -0.9 602,931 + +0.2 602,932 - +1.0 603,110 - +0.9 603,115 + +0.6 603,117 + +0.7 603,145 + -0.0 603,157 + +0.7 603,157 + +0.2 603,157 + +0.9 603,157 + +0.2 603,158 - +0.7 603,158 - +0.5 603,158 - +0.9 603,202 + EX28DRAFT_0600 0.54 +0.7 603,275 - EX28DRAFT_0601 0.11 +0.8 603,318 + EX28DRAFT_0601 0.29 +0.7 603,319 - EX28DRAFT_0601 0.30 +0.9 603,460 - -1.0 603,511 + +1.4 603,515 + +2.6 603,515 + -0.5 603,516 - -0.4 603,518 - +0.4 603,578 + +0.1 603,579 - -0.1 603,607 + -1.2 603,607 + -0.2 603,608 - -0.7 603,608 - +0.2 603,608 - -0.5 603,608 - +0.2 603,705 - EX28DRAFT_0602 0.51 +0.8 603,795 - -0.2 603,876 - +1.2 603,891 + -0.2 603,970 - EX28DRAFT_0603 0.12 -0.6 603,970 - EX28DRAFT_0603 0.12 -1.6 603,993 + EX28DRAFT_0603 0.15 +0.3 603,996 + EX28DRAFT_0603 0.16 -2.0 604,032 + EX28DRAFT_0603 0.21 -0.7 604,033 - EX28DRAFT_0603 0.22 +0.6 604,114 + EX28DRAFT_0603 0.35 -0.6 604,156 - EX28DRAFT_0603 0.41 -0.2 604,206 + EX28DRAFT_0603 0.49 -0.3 604,305 + EX28DRAFT_0603 0.65 +0.3 604,365 + EX28DRAFT_0603 0.75 -0.1 604,365 + EX28DRAFT_0603 0.75 +0.3 604,384 + EX28DRAFT_0603 0.78 -0.7 604,447 + EX28DRAFT_0603 0.88 -0.0 604,490 + +0.1 604,498 + -0.0 604,498 + +0.3 604,527 - -0.8 604,549 + +1.0 604,604 + -0.1 604,605 - +0.1 604,742 + +0.3 604,742 + -0.3 604,743 - -0.3
Or see this region's nucleotide sequence