Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0580 and EX28DRAFT_0581 are separated by 92 nucleotides EX28DRAFT_0581 and EX28DRAFT_0582 overlap by 26 nucleotides EX28DRAFT_0582 and EX28DRAFT_0583 overlap by 4 nucleotides
EX28DRAFT_0580: EX28DRAFT_0580 - Uncharacterized protein related to deoxyribodipyrimidine photolyase, at 578,147 to 579,676
_0580
EX28DRAFT_0581: EX28DRAFT_0581 - Transcriptional regulator, at 579,769 to 580,668
_0581
EX28DRAFT_0582: EX28DRAFT_0582 - ABC-type molybdate transport system, periplasmic component, at 580,643 to 581,431
_0582
EX28DRAFT_0583: EX28DRAFT_0583 - metabolite-proton symporter, at 581,428 to 582,741
_0583
Position (kb) 580
581
582 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 579.679 kb on + strand at 579.679 kb on + strand at 579.680 kb on - strand at 579.680 kb on - strand at 579.712 kb on + strand at 579.724 kb on - strand at 579.824 kb on - strand at 579.828 kb on + strand at 579.852 kb on + strand at 579.956 kb on + strand, within EX28DRAFT_0581 at 579.957 kb on - strand, within EX28DRAFT_0581 at 579.957 kb on - strand, within EX28DRAFT_0581 at 579.957 kb on - strand, within EX28DRAFT_0581 at 580.091 kb on - strand, within EX28DRAFT_0581 at 580.096 kb on - strand, within EX28DRAFT_0581 at 580.147 kb on - strand, within EX28DRAFT_0581 at 580.147 kb on - strand, within EX28DRAFT_0581 at 580.147 kb on - strand, within EX28DRAFT_0581 at 580.273 kb on + strand, within EX28DRAFT_0581 at 580.273 kb on + strand, within EX28DRAFT_0581 at 580.273 kb on + strand, within EX28DRAFT_0581 at 580.274 kb on - strand, within EX28DRAFT_0581 at 580.274 kb on - strand, within EX28DRAFT_0581 at 580.274 kb on - strand, within EX28DRAFT_0581 at 580.274 kb on - strand, within EX28DRAFT_0581 at 580.274 kb on - strand, within EX28DRAFT_0581 at 580.351 kb on + strand, within EX28DRAFT_0581 at 580.352 kb on - strand, within EX28DRAFT_0581 at 580.352 kb on - strand, within EX28DRAFT_0581 at 580.352 kb on - strand, within EX28DRAFT_0581 at 580.352 kb on - strand, within EX28DRAFT_0581 at 580.353 kb on + strand, within EX28DRAFT_0581 at 580.354 kb on - strand, within EX28DRAFT_0581 at 580.472 kb on + strand, within EX28DRAFT_0581 at 580.473 kb on - strand, within EX28DRAFT_0581 at 580.615 kb on + strand at 580.615 kb on + strand at 580.722 kb on + strand, within EX28DRAFT_0582 at 580.795 kb on - strand, within EX28DRAFT_0582 at 580.795 kb on - strand, within EX28DRAFT_0582 at 580.822 kb on + strand, within EX28DRAFT_0582 at 580.878 kb on + strand, within EX28DRAFT_0582 at 580.878 kb on + strand, within EX28DRAFT_0582 at 580.986 kb on + strand, within EX28DRAFT_0582 at 580.987 kb on - strand, within EX28DRAFT_0582 at 581.186 kb on - strand, within EX28DRAFT_0582 at 581.298 kb on + strand, within EX28DRAFT_0582 at 581.299 kb on - strand, within EX28DRAFT_0582 at 581.354 kb on + strand at 581.354 kb on + strand at 581.355 kb on - strand at 581.411 kb on - strand at 581.419 kb on - strand at 581.431 kb on + strand at 581.431 kb on + strand at 581.458 kb on - strand at 581.458 kb on - strand at 581.489 kb on + strand at 581.489 kb on + strand at 581.624 kb on + strand, within EX28DRAFT_0583 at 581.664 kb on + strand, within EX28DRAFT_0583 at 581.665 kb on - strand, within EX28DRAFT_0583 at 581.665 kb on - strand, within EX28DRAFT_0583 at 582.243 kb on + strand, within EX28DRAFT_0583 at 582.244 kb on - strand, within EX28DRAFT_0583 at 582.244 kb on - strand, within EX28DRAFT_0583 at 582.281 kb on + strand, within EX28DRAFT_0583 at 582.416 kb on + strand, within EX28DRAFT_0583 at 582.416 kb on + strand, within EX28DRAFT_0583
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 579,679 + -0.7 579,679 + +0.4 579,680 - +0.9 579,680 - -0.4 579,712 + -0.1 579,724 - +0.9 579,824 - -0.9 579,828 + -0.8 579,852 + -0.0 579,956 + EX28DRAFT_0581 0.21 +0.2 579,957 - EX28DRAFT_0581 0.21 +0.3 579,957 - EX28DRAFT_0581 0.21 +0.1 579,957 - EX28DRAFT_0581 0.21 -1.0 580,091 - EX28DRAFT_0581 0.36 -0.1 580,096 - EX28DRAFT_0581 0.36 +0.0 580,147 - EX28DRAFT_0581 0.42 -0.0 580,147 - EX28DRAFT_0581 0.42 -0.2 580,147 - EX28DRAFT_0581 0.42 -0.1 580,273 + EX28DRAFT_0581 0.56 +0.2 580,273 + EX28DRAFT_0581 0.56 +0.2 580,273 + EX28DRAFT_0581 0.56 +0.5 580,274 - EX28DRAFT_0581 0.56 +0.4 580,274 - EX28DRAFT_0581 0.56 -1.0 580,274 - EX28DRAFT_0581 0.56 +0.4 580,274 - EX28DRAFT_0581 0.56 -0.0 580,274 - EX28DRAFT_0581 0.56 +0.1 580,351 + EX28DRAFT_0581 0.65 -0.1 580,352 - EX28DRAFT_0581 0.65 -1.7 580,352 - EX28DRAFT_0581 0.65 -0.6 580,352 - EX28DRAFT_0581 0.65 -0.8 580,352 - EX28DRAFT_0581 0.65 -0.1 580,353 + EX28DRAFT_0581 0.65 +0.9 580,354 - EX28DRAFT_0581 0.65 -1.1 580,472 + EX28DRAFT_0581 0.78 +0.9 580,473 - EX28DRAFT_0581 0.78 -0.2 580,615 + +0.2 580,615 + +0.2 580,722 + EX28DRAFT_0582 0.10 -0.4 580,795 - EX28DRAFT_0582 0.19 +0.1 580,795 - EX28DRAFT_0582 0.19 -0.1 580,822 + EX28DRAFT_0582 0.23 -0.1 580,878 + EX28DRAFT_0582 0.30 -1.0 580,878 + EX28DRAFT_0582 0.30 -0.2 580,986 + EX28DRAFT_0582 0.43 +0.2 580,987 - EX28DRAFT_0582 0.44 -0.0 581,186 - EX28DRAFT_0582 0.69 -0.3 581,298 + EX28DRAFT_0582 0.83 +0.7 581,299 - EX28DRAFT_0582 0.83 -0.8 581,354 + -2.7 581,354 + +0.4 581,355 - -4.1 581,411 - -0.0 581,419 - -0.1 581,431 + +0.4 581,431 + -0.4 581,458 - -0.5 581,458 - -0.0 581,489 + +0.9 581,489 + -0.0 581,624 + EX28DRAFT_0583 0.15 -0.1 581,664 + EX28DRAFT_0583 0.18 +0.9 581,665 - EX28DRAFT_0583 0.18 +0.2 581,665 - EX28DRAFT_0583 0.18 -0.3 582,243 + EX28DRAFT_0583 0.62 -0.9 582,244 - EX28DRAFT_0583 0.62 -0.5 582,244 - EX28DRAFT_0583 0.62 +0.2 582,281 + EX28DRAFT_0583 0.65 +0.5 582,416 + EX28DRAFT_0583 0.75 +0.1 582,416 + EX28DRAFT_0583 0.75 +0.4
Or see this region's nucleotide sequence