Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0562 and EX28DRAFT_0563 are separated by 61 nucleotides EX28DRAFT_0563 and EX28DRAFT_0564 are separated by 59 nucleotides EX28DRAFT_0564 and EX28DRAFT_0565 are separated by 320 nucleotides
EX28DRAFT_0562: EX28DRAFT_0562 - ATPase, P-type (transporting), HAD superfamily, subfamily IC, at 557,962 to 560,655
_0562
EX28DRAFT_0563: EX28DRAFT_0563 - Uncharacterized protein conserved in bacteria, at 560,717 to 561,613
_0563
EX28DRAFT_0564: EX28DRAFT_0564 - tRNA, at 561,673 to 561,748
_0564
EX28DRAFT_0565: EX28DRAFT_0565 - Transcriptional regulator, at 562,069 to 562,986
_0565
Position (kb) 560
561
562 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 559.771 kb on + strand, within EX28DRAFT_0562 at 559.776 kb on + strand, within EX28DRAFT_0562 at 559.833 kb on + strand, within EX28DRAFT_0562 at 560.240 kb on + strand, within EX28DRAFT_0562 at 560.240 kb on + strand, within EX28DRAFT_0562 at 560.240 kb on + strand, within EX28DRAFT_0562 at 560.395 kb on + strand at 560.396 kb on - strand at 560.396 kb on - strand at 560.480 kb on + strand at 560.481 kb on - strand at 560.510 kb on - strand at 560.602 kb on - strand at 560.653 kb on + strand at 560.654 kb on - strand at 560.657 kb on - strand at 560.662 kb on - strand at 560.716 kb on + strand at 560.717 kb on - strand at 560.729 kb on - strand at 560.783 kb on + strand at 560.785 kb on + strand at 560.786 kb on - strand at 560.903 kb on - strand, within EX28DRAFT_0563 at 560.964 kb on + strand, within EX28DRAFT_0563 at 561.035 kb on + strand, within EX28DRAFT_0563 at 561.038 kb on + strand, within EX28DRAFT_0563 at 561.038 kb on + strand, within EX28DRAFT_0563 at 561.039 kb on - strand, within EX28DRAFT_0563 at 561.137 kb on - strand, within EX28DRAFT_0563 at 561.251 kb on + strand, within EX28DRAFT_0563 at 561.261 kb on - strand, within EX28DRAFT_0563 at 561.261 kb on - strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.275 kb on + strand, within EX28DRAFT_0563 at 561.276 kb on - strand, within EX28DRAFT_0563 at 561.292 kb on + strand, within EX28DRAFT_0563 at 561.362 kb on + strand, within EX28DRAFT_0563 at 561.506 kb on - strand, within EX28DRAFT_0563 at 561.506 kb on - strand, within EX28DRAFT_0563 at 561.629 kb on - strand at 561.768 kb on + strand at 561.924 kb on + strand at 561.925 kb on - strand at 561.925 kb on - strand at 561.939 kb on + strand at 561.940 kb on - strand at 561.943 kb on + strand at 561.943 kb on + strand at 561.944 kb on - strand at 562.076 kb on + strand at 562.090 kb on + strand at 562.091 kb on - strand at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.261 kb on + strand, within EX28DRAFT_0565 at 562.262 kb on - strand, within EX28DRAFT_0565 at 562.264 kb on - strand, within EX28DRAFT_0565 at 562.383 kb on + strand, within EX28DRAFT_0565 at 562.438 kb on + strand, within EX28DRAFT_0565 at 562.439 kb on - strand, within EX28DRAFT_0565 at 562.604 kb on + strand, within EX28DRAFT_0565
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 559,771 + EX28DRAFT_0562 0.67 -0.1 559,776 + EX28DRAFT_0562 0.67 +1.3 559,833 + EX28DRAFT_0562 0.69 -0.3 560,240 + EX28DRAFT_0562 0.85 -2.2 560,240 + EX28DRAFT_0562 0.85 +0.9 560,240 + EX28DRAFT_0562 0.85 -0.1 560,395 + +1.1 560,396 - +0.8 560,396 - +0.7 560,480 + -1.1 560,481 - +0.8 560,510 - +0.1 560,602 - -0.1 560,653 + -0.1 560,654 - +0.4 560,657 - +0.0 560,662 - -1.3 560,716 + -0.5 560,717 - +0.9 560,729 - -0.6 560,783 + -0.3 560,785 + +1.1 560,786 - -0.2 560,903 - EX28DRAFT_0563 0.21 -0.1 560,964 + EX28DRAFT_0563 0.28 +0.6 561,035 + EX28DRAFT_0563 0.35 +0.6 561,038 + EX28DRAFT_0563 0.36 +0.1 561,038 + EX28DRAFT_0563 0.36 +0.3 561,039 - EX28DRAFT_0563 0.36 +1.2 561,137 - EX28DRAFT_0563 0.47 -0.2 561,251 + EX28DRAFT_0563 0.60 +1.6 561,261 - EX28DRAFT_0563 0.61 -0.1 561,261 - EX28DRAFT_0563 0.61 -0.4 561,275 + EX28DRAFT_0563 0.62 +0.6 561,275 + EX28DRAFT_0563 0.62 +1.4 561,275 + EX28DRAFT_0563 0.62 -0.3 561,276 - EX28DRAFT_0563 0.62 -0.1 561,292 + EX28DRAFT_0563 0.64 -2.5 561,362 + EX28DRAFT_0563 0.72 +0.6 561,506 - EX28DRAFT_0563 0.88 -0.0 561,506 - EX28DRAFT_0563 0.88 -0.5 561,629 - -0.1 561,768 + -0.2 561,924 + +0.5 561,925 - +0.0 561,925 - -1.0 561,939 + +0.3 561,940 - -4.6 561,943 + +0.4 561,943 + +0.5 561,944 - -0.4 562,076 + -0.5 562,090 + -0.6 562,091 - -0.5 562,261 + EX28DRAFT_0565 0.21 +0.3 562,261 + EX28DRAFT_0565 0.21 +0.1 562,262 - EX28DRAFT_0565 0.21 +0.0 562,264 - EX28DRAFT_0565 0.21 -2.5 562,383 + EX28DRAFT_0565 0.34 +0.3 562,438 + EX28DRAFT_0565 0.40 -0.3 562,439 - EX28DRAFT_0565 0.40 -1.0 562,604 + EX28DRAFT_0565 0.58 +0.9
Or see this region's nucleotide sequence