Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0539 and EX28DRAFT_0540 are separated by 5 nucleotides EX28DRAFT_0540 and EX28DRAFT_0541 are separated by 45 nucleotides EX28DRAFT_0541 and EX28DRAFT_0542 are separated by 201 nucleotides
EX28DRAFT_0539: EX28DRAFT_0539 - histidinol dehydrogenase, at 532,901 to 534,205
_0539
EX28DRAFT_0540: EX28DRAFT_0540 - ATP phosphoribosyltransferase, at 534,211 to 535,110
_0540
EX28DRAFT_0541: EX28DRAFT_0541 - RNA, at 535,156 to 535,279
_0541
EX28DRAFT_0542: EX28DRAFT_0542 - Nucleoside-diphosphate-sugar epimerases, at 535,481 to 536,305
_0542
Position (kb) 534
535
536 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 533.569 kb on - strand, within EX28DRAFT_0539 at 533.569 kb on - strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.661 kb on + strand, within EX28DRAFT_0539 at 533.662 kb on - strand, within EX28DRAFT_0539 at 533.662 kb on - strand, within EX28DRAFT_0539 at 533.817 kb on + strand, within EX28DRAFT_0539 at 533.818 kb on - strand, within EX28DRAFT_0539 at 533.818 kb on - strand, within EX28DRAFT_0539 at 533.917 kb on + strand, within EX28DRAFT_0539 at 533.918 kb on - strand, within EX28DRAFT_0539 at 534.045 kb on + strand, within EX28DRAFT_0539 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.389 kb on - strand, within EX28DRAFT_0540 at 534.428 kb on + strand, within EX28DRAFT_0540 at 534.428 kb on + strand, within EX28DRAFT_0540 at 534.429 kb on - strand, within EX28DRAFT_0540 at 534.545 kb on + strand, within EX28DRAFT_0540 at 534.732 kb on + strand, within EX28DRAFT_0540 at 534.733 kb on - strand, within EX28DRAFT_0540 at 534.733 kb on - strand, within EX28DRAFT_0540 at 534.834 kb on - strand, within EX28DRAFT_0540 at 534.939 kb on + strand, within EX28DRAFT_0540 at 535.015 kb on - strand, within EX28DRAFT_0540 at 535.081 kb on - strand at 535.081 kb on - strand at 535.084 kb on + strand at 535.084 kb on + strand at 535.085 kb on - strand at 535.085 kb on - strand at 535.135 kb on + strand at 535.257 kb on - strand, within EX28DRAFT_0541 at 535.288 kb on - strand at 535.308 kb on - strand at 535.349 kb on + strand at 535.349 kb on + strand at 535.360 kb on + strand at 535.368 kb on - strand at 535.393 kb on - strand at 535.414 kb on - strand at 535.449 kb on - strand at 535.450 kb on + strand at 535.450 kb on + strand at 535.451 kb on - strand at 535.461 kb on + strand at 535.507 kb on - strand at 535.507 kb on - strand at 535.950 kb on + strand, within EX28DRAFT_0542 at 535.951 kb on - strand, within EX28DRAFT_0542 at 535.951 kb on - strand, within EX28DRAFT_0542 at 536.076 kb on + strand, within EX28DRAFT_0542 at 536.108 kb on + strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542 at 536.109 kb on - strand, within EX28DRAFT_0542
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 533,569 - EX28DRAFT_0539 0.51 -0.0 533,569 - EX28DRAFT_0539 0.51 -3.5 533,659 + EX28DRAFT_0539 0.58 -2.0 533,659 + EX28DRAFT_0539 0.58 -3.2 533,659 + EX28DRAFT_0539 0.58 -2.1 533,660 - EX28DRAFT_0539 0.58 +0.9 533,660 - EX28DRAFT_0539 0.58 -3.7 533,660 - EX28DRAFT_0539 0.58 -2.5 533,661 + EX28DRAFT_0539 0.58 +1.9 533,662 - EX28DRAFT_0539 0.58 -3.0 533,662 - EX28DRAFT_0539 0.58 -1.1 533,817 + EX28DRAFT_0539 0.70 -4.1 533,818 - EX28DRAFT_0539 0.70 -3.5 533,818 - EX28DRAFT_0539 0.70 +0.1 533,917 + EX28DRAFT_0539 0.78 -3.1 533,918 - EX28DRAFT_0539 0.78 -1.6 534,045 + EX28DRAFT_0539 0.88 -3.8 534,389 - EX28DRAFT_0540 0.20 -4.1 534,389 - EX28DRAFT_0540 0.20 -5.3 534,389 - EX28DRAFT_0540 0.20 -4.6 534,389 - EX28DRAFT_0540 0.20 -1.7 534,428 + EX28DRAFT_0540 0.24 -1.0 534,428 + EX28DRAFT_0540 0.24 -4.3 534,429 - EX28DRAFT_0540 0.24 -0.2 534,545 + EX28DRAFT_0540 0.37 -1.3 534,732 + EX28DRAFT_0540 0.58 -2.0 534,733 - EX28DRAFT_0540 0.58 -2.3 534,733 - EX28DRAFT_0540 0.58 -3.5 534,834 - EX28DRAFT_0540 0.69 -4.7 534,939 + EX28DRAFT_0540 0.81 -2.5 535,015 - EX28DRAFT_0540 0.89 -4.8 535,081 - +1.9 535,081 - -1.6 535,084 + -3.6 535,084 + -2.4 535,085 - -1.6 535,085 - -2.0 535,135 + -4.0 535,257 - EX28DRAFT_0541 0.81 -0.7 535,288 - -2.2 535,308 - -2.5 535,349 + -2.1 535,349 + -1.8 535,360 + -2.5 535,368 - -2.8 535,393 - +0.2 535,414 - +0.5 535,449 - -0.5 535,450 + -0.4 535,450 + -0.0 535,451 - -1.6 535,461 + +1.1 535,507 - +0.0 535,507 - -1.8 535,950 + EX28DRAFT_0542 0.57 +0.1 535,951 - EX28DRAFT_0542 0.57 -0.4 535,951 - EX28DRAFT_0542 0.57 -0.1 536,076 + EX28DRAFT_0542 0.72 -0.8 536,108 + EX28DRAFT_0542 0.76 +0.2 536,109 - EX28DRAFT_0542 0.76 +0.5 536,109 - EX28DRAFT_0542 0.76 -0.4 536,109 - EX28DRAFT_0542 0.76 -0.2 536,109 - EX28DRAFT_0542 0.76 -0.0 536,109 - EX28DRAFT_0542 0.76 +0.6
Or see this region's nucleotide sequence