Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0537 and EX28DRAFT_0538 overlap by 4 nucleotides EX28DRAFT_0538 and EX28DRAFT_0539 overlap by 4 nucleotides
EX28DRAFT_0537: EX28DRAFT_0537 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 530,779 to 531,846
_0537
EX28DRAFT_0538: EX28DRAFT_0538 - histidinol-phosphate aminotransferase, at 531,843 to 532,904
_0538
EX28DRAFT_0539: EX28DRAFT_0539 - histidinol dehydrogenase, at 532,901 to 534,205
_0539
Position (kb) 531
532
533 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 531.003 kb on + strand, within EX28DRAFT_0537 at 531.005 kb on + strand, within EX28DRAFT_0537 at 531.173 kb on + strand, within EX28DRAFT_0537 at 531.174 kb on - strand, within EX28DRAFT_0537 at 531.174 kb on - strand, within EX28DRAFT_0537 at 531.174 kb on - strand, within EX28DRAFT_0537 at 531.237 kb on + strand, within EX28DRAFT_0537 at 531.387 kb on + strand, within EX28DRAFT_0537 at 531.470 kb on + strand, within EX28DRAFT_0537 at 531.470 kb on + strand, within EX28DRAFT_0537 at 531.470 kb on + strand, within EX28DRAFT_0537 at 531.471 kb on - strand, within EX28DRAFT_0537 at 531.471 kb on - strand, within EX28DRAFT_0537 at 531.471 kb on - strand, within EX28DRAFT_0537 at 531.471 kb on - strand, within EX28DRAFT_0537 at 531.471 kb on - strand, within EX28DRAFT_0537 at 531.471 kb on - strand, within EX28DRAFT_0537 at 531.589 kb on + strand, within EX28DRAFT_0537 at 531.628 kb on - strand, within EX28DRAFT_0537 at 531.703 kb on - strand, within EX28DRAFT_0537 at 531.805 kb on - strand at 531.846 kb on + strand at 531.906 kb on - strand at 531.939 kb on - strand at 531.956 kb on + strand, within EX28DRAFT_0538 at 532.018 kb on + strand, within EX28DRAFT_0538 at 532.019 kb on - strand, within EX28DRAFT_0538 at 532.022 kb on + strand, within EX28DRAFT_0538 at 532.023 kb on - strand, within EX28DRAFT_0538 at 532.082 kb on - strand, within EX28DRAFT_0538 at 532.355 kb on - strand, within EX28DRAFT_0538 at 532.576 kb on + strand, within EX28DRAFT_0538 at 532.589 kb on + strand, within EX28DRAFT_0538 at 532.590 kb on - strand, within EX28DRAFT_0538 at 532.590 kb on - strand, within EX28DRAFT_0538 at 532.600 kb on + strand, within EX28DRAFT_0538 at 532.705 kb on + strand, within EX28DRAFT_0538 at 532.856 kb on - strand at 533.179 kb on + strand, within EX28DRAFT_0539 at 533.569 kb on - strand, within EX28DRAFT_0539 at 533.569 kb on - strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.659 kb on + strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.660 kb on - strand, within EX28DRAFT_0539 at 533.661 kb on + strand, within EX28DRAFT_0539 at 533.662 kb on - strand, within EX28DRAFT_0539 at 533.662 kb on - strand, within EX28DRAFT_0539 at 533.817 kb on + strand, within EX28DRAFT_0539 at 533.818 kb on - strand, within EX28DRAFT_0539 at 533.818 kb on - strand, within EX28DRAFT_0539
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 531,003 + EX28DRAFT_0537 0.21 -2.7 531,005 + EX28DRAFT_0537 0.21 -3.2 531,173 + EX28DRAFT_0537 0.37 -2.0 531,174 - EX28DRAFT_0537 0.37 -1.3 531,174 - EX28DRAFT_0537 0.37 -0.9 531,174 - EX28DRAFT_0537 0.37 -1.6 531,237 + EX28DRAFT_0537 0.43 -1.0 531,387 + EX28DRAFT_0537 0.57 -2.0 531,470 + EX28DRAFT_0537 0.65 -5.0 531,470 + EX28DRAFT_0537 0.65 -2.2 531,470 + EX28DRAFT_0537 0.65 -2.2 531,471 - EX28DRAFT_0537 0.65 +1.9 531,471 - EX28DRAFT_0537 0.65 -3.8 531,471 - EX28DRAFT_0537 0.65 -2.8 531,471 - EX28DRAFT_0537 0.65 -2.2 531,471 - EX28DRAFT_0537 0.65 -3.1 531,471 - EX28DRAFT_0537 0.65 -1.3 531,589 + EX28DRAFT_0537 0.76 -4.5 531,628 - EX28DRAFT_0537 0.79 -3.1 531,703 - EX28DRAFT_0537 0.87 -2.8 531,805 - -2.6 531,846 + -4.7 531,906 - -2.5 531,939 - -1.5 531,956 + EX28DRAFT_0538 0.11 -2.2 532,018 + EX28DRAFT_0538 0.16 -3.9 532,019 - EX28DRAFT_0538 0.17 -4.6 532,022 + EX28DRAFT_0538 0.17 -4.0 532,023 - EX28DRAFT_0538 0.17 -2.1 532,082 - EX28DRAFT_0538 0.23 -0.1 532,355 - EX28DRAFT_0538 0.48 -2.9 532,576 + EX28DRAFT_0538 0.69 -2.6 532,589 + EX28DRAFT_0538 0.70 -2.0 532,590 - EX28DRAFT_0538 0.70 -4.1 532,590 - EX28DRAFT_0538 0.70 -3.8 532,600 + EX28DRAFT_0538 0.71 -3.3 532,705 + EX28DRAFT_0538 0.81 -3.2 532,856 - -3.5 533,179 + EX28DRAFT_0539 0.21 -3.4 533,569 - EX28DRAFT_0539 0.51 -0.0 533,569 - EX28DRAFT_0539 0.51 -3.5 533,659 + EX28DRAFT_0539 0.58 -2.0 533,659 + EX28DRAFT_0539 0.58 -3.2 533,659 + EX28DRAFT_0539 0.58 -2.1 533,660 - EX28DRAFT_0539 0.58 +0.9 533,660 - EX28DRAFT_0539 0.58 -3.7 533,660 - EX28DRAFT_0539 0.58 -2.5 533,661 + EX28DRAFT_0539 0.58 +1.9 533,662 - EX28DRAFT_0539 0.58 -3.0 533,662 - EX28DRAFT_0539 0.58 -1.1 533,817 + EX28DRAFT_0539 0.70 -4.1 533,818 - EX28DRAFT_0539 0.70 -3.5 533,818 - EX28DRAFT_0539 0.70 +0.1
Or see this region's nucleotide sequence