Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0533 and EX28DRAFT_0534 overlap by 7 nucleotides EX28DRAFT_0534 and EX28DRAFT_0535 overlap by 19 nucleotides EX28DRAFT_0535 and EX28DRAFT_0536 overlap by 1 nucleotides EX28DRAFT_0536 and EX28DRAFT_0537 overlap by 1 nucleotides
EX28DRAFT_0533: EX28DRAFT_0533 - phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)/phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 528,089 to 528,700
_0533
EX28DRAFT_0534: EX28DRAFT_0534 - imidazoleglycerol phosphate synthase, cyclase subunit, at 528,694 to 529,470
_0534
EX28DRAFT_0535: EX28DRAFT_0535 - 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16), at 529,452 to 530,189
_0535
EX28DRAFT_0536: EX28DRAFT_0536 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 530,189 to 530,779
_0536
EX28DRAFT_0537: EX28DRAFT_0537 - imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 530,779 to 531,846
_0537
Position (kb)
529
530
531 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 528.592 kb on + strand, within EX28DRAFT_0533 at 528.593 kb on - strand, within EX28DRAFT_0533 at 528.593 kb on - strand, within EX28DRAFT_0533 at 528.593 kb on - strand, within EX28DRAFT_0533 at 528.593 kb on - strand, within EX28DRAFT_0533 at 528.593 kb on - strand, within EX28DRAFT_0533 at 528.595 kb on - strand, within EX28DRAFT_0533 at 528.731 kb on + strand at 528.750 kb on + strand at 528.751 kb on - strand at 528.751 kb on - strand at 529.053 kb on - strand, within EX28DRAFT_0534 at 529.074 kb on - strand, within EX28DRAFT_0534 at 529.098 kb on + strand, within EX28DRAFT_0534 at 529.099 kb on - strand, within EX28DRAFT_0534 at 529.177 kb on - strand, within EX28DRAFT_0534 at 529.322 kb on + strand, within EX28DRAFT_0534 at 529.323 kb on - strand, within EX28DRAFT_0534 at 529.435 kb on + strand at 529.450 kb on + strand at 529.450 kb on + strand at 529.450 kb on + strand at 529.451 kb on - strand at 529.451 kb on - strand at 529.490 kb on + strand at 529.566 kb on + strand, within EX28DRAFT_0535 at 529.566 kb on + strand, within EX28DRAFT_0535 at 529.566 kb on + strand, within EX28DRAFT_0535 at 529.567 kb on - strand, within EX28DRAFT_0535 at 530.055 kb on + strand, within EX28DRAFT_0535 at 530.055 kb on + strand, within EX28DRAFT_0535 at 530.157 kb on - strand at 530.184 kb on - strand at 530.305 kb on - strand, within EX28DRAFT_0536 at 530.346 kb on + strand, within EX28DRAFT_0536 at 530.649 kb on - strand, within EX28DRAFT_0536 at 530.707 kb on - strand, within EX28DRAFT_0536 at 530.781 kb on - strand at 531.003 kb on + strand, within EX28DRAFT_0537 at 531.005 kb on + strand, within EX28DRAFT_0537 at 531.173 kb on + strand, within EX28DRAFT_0537 at 531.174 kb on - strand, within EX28DRAFT_0537 at 531.174 kb on - strand, within EX28DRAFT_0537 at 531.174 kb on - strand, within EX28DRAFT_0537
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 528,592 + EX28DRAFT_0533 0.82 -4.5 528,593 - EX28DRAFT_0533 0.82 -1.7 528,593 - EX28DRAFT_0533 0.82 -1.7 528,593 - EX28DRAFT_0533 0.82 -0.1 528,593 - EX28DRAFT_0533 0.82 -1.7 528,593 - EX28DRAFT_0533 0.82 -2.7 528,595 - EX28DRAFT_0533 0.83 -3.7 528,731 + -2.7 528,750 + -2.2 528,751 - -5.1 528,751 - -3.8 529,053 - EX28DRAFT_0534 0.46 -1.9 529,074 - EX28DRAFT_0534 0.49 -1.9 529,098 + EX28DRAFT_0534 0.52 -3.0 529,099 - EX28DRAFT_0534 0.52 -3.1 529,177 - EX28DRAFT_0534 0.62 -0.1 529,322 + EX28DRAFT_0534 0.81 -5.1 529,323 - EX28DRAFT_0534 0.81 -1.3 529,435 + -0.1 529,450 + -2.7 529,450 + -4.0 529,450 + -1.9 529,451 - -2.3 529,451 - -2.5 529,490 + -1.8 529,566 + EX28DRAFT_0535 0.15 -0.9 529,566 + EX28DRAFT_0535 0.15 -4.4 529,566 + EX28DRAFT_0535 0.15 -0.9 529,567 - EX28DRAFT_0535 0.16 -4.8 530,055 + EX28DRAFT_0535 0.82 -2.1 530,055 + EX28DRAFT_0535 0.82 -3.4 530,157 - -2.5 530,184 - -0.1 530,305 - EX28DRAFT_0536 0.20 -2.6 530,346 + EX28DRAFT_0536 0.27 -0.1 530,649 - EX28DRAFT_0536 0.78 -3.0 530,707 - EX28DRAFT_0536 0.88 -2.6 530,781 - -3.1 531,003 + EX28DRAFT_0537 0.21 -2.7 531,005 + EX28DRAFT_0537 0.21 -3.2 531,173 + EX28DRAFT_0537 0.37 -2.0 531,174 - EX28DRAFT_0537 0.37 -1.3 531,174 - EX28DRAFT_0537 0.37 -0.9 531,174 - EX28DRAFT_0537 0.37 -1.6
Or see this region's nucleotide sequence