Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0526

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0524 and EX28DRAFT_0525 overlap by 8 nucleotidesEX28DRAFT_0525 and EX28DRAFT_0526 are separated by 1 nucleotidesEX28DRAFT_0526 and EX28DRAFT_0527 are separated by 46 nucleotidesEX28DRAFT_0527 and EX28DRAFT_0528 are separated by 58 nucleotides EX28DRAFT_0524: EX28DRAFT_0524 - hypothetical protein, at 517,739 to 518,887 _0524 EX28DRAFT_0525: EX28DRAFT_0525 - Bacterial transferase hexapeptide (six repeats), at 518,880 to 519,416 _0525 EX28DRAFT_0526: EX28DRAFT_0526 - hypothetical protein, at 519,418 to 520,428 _0526 EX28DRAFT_0527: EX28DRAFT_0527 - glucose-1-phosphate thymidylyltransferase, short form, at 520,475 to 521,347 _0527 EX28DRAFT_0528: EX28DRAFT_0528 - Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase, at 521,406 to 522,872 _0528 Position (kb) 519 520 521Strain fitness (log2 ratio) -2 -1 0 1 2at 518.515 kb on + strand, within EX28DRAFT_0524at 518.572 kb on - strand, within EX28DRAFT_0524at 518.668 kb on + strand, within EX28DRAFT_0524at 519.988 kb on + strand, within EX28DRAFT_0526at 520.460 kb on + strandat 521.319 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
518,515 + EX28DRAFT_0524 0.68 +0.5
518,572 - EX28DRAFT_0524 0.72 -0.5
518,668 + EX28DRAFT_0524 0.81 +2.2
519,988 + EX28DRAFT_0526 0.56 -2.0
520,460 + +0.5
521,319 + -1.2

Or see this region's nucleotide sequence