Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0498 and EX28DRAFT_0499 overlap by 26 nucleotides EX28DRAFT_0499 and EX28DRAFT_0500 are separated by 16 nucleotides EX28DRAFT_0500 and EX28DRAFT_0501 are separated by 15 nucleotides
EX28DRAFT_0498: EX28DRAFT_0498 - colanic acid biosynthesis glycosyl transferase WcaC, at 489,702 to 490,919
_0498
EX28DRAFT_0499: EX28DRAFT_0499 - putative colanic acid polymerase WcaD, at 490,894 to 492,114
_0499
EX28DRAFT_0500: EX28DRAFT_0500 - colanic acid biosynthesis glycosyl transferase WcaE, at 492,131 to 492,877
_0500
EX28DRAFT_0501: EX28DRAFT_0501 - colanic acid biosynthesis acetyltransferase WcaF, at 492,893 to 493,441
_0501
Position (kb) 490
491
492
493 Strain fitness (log2 ratio) -2
-1
0
1
2 at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.017 kb on + strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.018 kb on - strand, within EX28DRAFT_0498 at 490.136 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498 at 490.163 kb on + strand, within EX28DRAFT_0498 at 490.284 kb on - strand, within EX28DRAFT_0498 at 490.284 kb on - strand, within EX28DRAFT_0498 at 490.349 kb on + strand, within EX28DRAFT_0498 at 490.369 kb on + strand, within EX28DRAFT_0498 at 490.652 kb on + strand, within EX28DRAFT_0498 at 490.893 kb on + strand at 490.893 kb on + strand at 490.894 kb on - strand at 490.921 kb on + strand at 490.922 kb on - strand at 490.942 kb on + strand at 490.943 kb on - strand at 490.943 kb on - strand at 491.029 kb on + strand, within EX28DRAFT_0499 at 491.029 kb on + strand, within EX28DRAFT_0499 at 491.101 kb on + strand, within EX28DRAFT_0499 at 491.102 kb on - strand, within EX28DRAFT_0499 at 491.272 kb on - strand, within EX28DRAFT_0499 at 491.790 kb on - strand, within EX28DRAFT_0499 at 491.790 kb on - strand, within EX28DRAFT_0499 at 491.815 kb on + strand, within EX28DRAFT_0499 at 492.103 kb on - strand at 492.103 kb on - strand at 492.130 kb on + strand at 492.181 kb on - strand at 492.332 kb on - strand, within EX28DRAFT_0500 at 492.332 kb on - strand, within EX28DRAFT_0500 at 492.341 kb on + strand, within EX28DRAFT_0500 at 492.342 kb on - strand, within EX28DRAFT_0500 at 492.342 kb on - strand, within EX28DRAFT_0500 at 492.473 kb on + strand, within EX28DRAFT_0500 at 492.474 kb on - strand, within EX28DRAFT_0500 at 492.474 kb on - strand, within EX28DRAFT_0500 at 492.542 kb on + strand, within EX28DRAFT_0500 at 492.543 kb on - strand, within EX28DRAFT_0500 at 492.544 kb on + strand, within EX28DRAFT_0500 at 492.549 kb on - strand, within EX28DRAFT_0500 at 492.629 kb on - strand, within EX28DRAFT_0500
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 490,017 + EX28DRAFT_0498 0.26 +0.5 490,017 + EX28DRAFT_0498 0.26 +0.3 490,018 - EX28DRAFT_0498 0.26 +0.5 490,018 - EX28DRAFT_0498 0.26 +0.2 490,136 + EX28DRAFT_0498 0.36 -0.0 490,163 + EX28DRAFT_0498 0.38 -1.6 490,163 + EX28DRAFT_0498 0.38 +0.5 490,284 - EX28DRAFT_0498 0.48 -0.0 490,284 - EX28DRAFT_0498 0.48 -0.2 490,349 + EX28DRAFT_0498 0.53 +0.1 490,369 + EX28DRAFT_0498 0.55 +0.8 490,652 + EX28DRAFT_0498 0.78 +1.8 490,893 + +0.5 490,893 + -0.5 490,894 - -0.0 490,921 + -0.4 490,922 - +0.3 490,942 + -1.1 490,943 - -0.5 490,943 - +0.6 491,029 + EX28DRAFT_0499 0.11 -0.3 491,029 + EX28DRAFT_0499 0.11 +0.3 491,101 + EX28DRAFT_0499 0.17 -2.1 491,102 - EX28DRAFT_0499 0.17 -0.6 491,272 - EX28DRAFT_0499 0.31 -0.3 491,790 - EX28DRAFT_0499 0.73 +1.0 491,790 - EX28DRAFT_0499 0.73 +0.4 491,815 + EX28DRAFT_0499 0.75 -2.1 492,103 - -0.4 492,103 - -0.4 492,130 + -1.4 492,181 - +0.9 492,332 - EX28DRAFT_0500 0.27 +0.7 492,332 - EX28DRAFT_0500 0.27 +0.3 492,341 + EX28DRAFT_0500 0.28 -0.1 492,342 - EX28DRAFT_0500 0.28 +1.1 492,342 - EX28DRAFT_0500 0.28 -0.3 492,473 + EX28DRAFT_0500 0.46 -0.1 492,474 - EX28DRAFT_0500 0.46 -0.5 492,474 - EX28DRAFT_0500 0.46 +0.1 492,542 + EX28DRAFT_0500 0.55 +0.1 492,543 - EX28DRAFT_0500 0.55 -0.3 492,544 + EX28DRAFT_0500 0.55 -0.3 492,549 - EX28DRAFT_0500 0.56 -0.3 492,629 - EX28DRAFT_0500 0.67 +0.7
Or see this region's nucleotide sequence