Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0488 and EX28DRAFT_0489 are separated by 91 nucleotides EX28DRAFT_0489 and EX28DRAFT_0490 are separated by 22 nucleotides EX28DRAFT_0490 and EX28DRAFT_0491 are separated by 109 nucleotides
EX28DRAFT_0488: EX28DRAFT_0488 - uridine kinase (EC 2.7.1.48), at 478,948 to 479,589
_0488
EX28DRAFT_0489: EX28DRAFT_0489 - deoxycytidine triphosphate deaminase, at 479,681 to 480,262
_0489
EX28DRAFT_0490: EX28DRAFT_0490 - Uncharacterized protein involved in outer membrane biogenesis, at 480,285 to 482,135
_0490
EX28DRAFT_0491: EX28DRAFT_0491 - Membrane protein TerC, possibly involved in tellurium resistance, at 482,245 to 483,828
_0491
Position (kb) 480
481
482
483 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 479.408 kb on + strand, within EX28DRAFT_0488 at 479.409 kb on - strand, within EX28DRAFT_0488 at 479.449 kb on + strand, within EX28DRAFT_0488 at 479.504 kb on - strand, within EX28DRAFT_0488 at 479.533 kb on - strand at 479.548 kb on - strand at 479.548 kb on - strand at 479.548 kb on - strand at 479.548 kb on - strand at 479.559 kb on - strand at 479.559 kb on - strand at 480.384 kb on + strand at 480.384 kb on + strand at 480.385 kb on - strand at 480.385 kb on - strand at 480.485 kb on + strand, within EX28DRAFT_0490 at 480.899 kb on + strand, within EX28DRAFT_0490 at 480.900 kb on - strand, within EX28DRAFT_0490 at 481.083 kb on - strand, within EX28DRAFT_0490 at 481.263 kb on - strand, within EX28DRAFT_0490 at 481.281 kb on + strand, within EX28DRAFT_0490 at 481.281 kb on + strand, within EX28DRAFT_0490 at 481.282 kb on - strand, within EX28DRAFT_0490 at 481.282 kb on - strand, within EX28DRAFT_0490 at 481.283 kb on + strand, within EX28DRAFT_0490 at 481.328 kb on + strand, within EX28DRAFT_0490 at 481.380 kb on - strand, within EX28DRAFT_0490 at 481.516 kb on + strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.539 kb on - strand, within EX28DRAFT_0490 at 481.543 kb on - strand, within EX28DRAFT_0490 at 481.677 kb on - strand, within EX28DRAFT_0490 at 481.677 kb on - strand, within EX28DRAFT_0490 at 481.736 kb on + strand, within EX28DRAFT_0490 at 481.740 kb on + strand, within EX28DRAFT_0490 at 481.740 kb on + strand, within EX28DRAFT_0490 at 481.741 kb on - strand, within EX28DRAFT_0490 at 481.802 kb on + strand, within EX28DRAFT_0490 at 481.803 kb on - strand, within EX28DRAFT_0490 at 481.815 kb on - strand, within EX28DRAFT_0490 at 481.838 kb on - strand, within EX28DRAFT_0490 at 481.975 kb on + strand at 481.975 kb on + strand at 482.002 kb on - strand at 482.002 kb on - strand at 482.134 kb on - strand at 482.243 kb on - strand at 482.246 kb on + strand at 482.410 kb on - strand, within EX28DRAFT_0491 at 482.418 kb on - strand, within EX28DRAFT_0491 at 482.418 kb on - strand, within EX28DRAFT_0491 at 482.450 kb on + strand, within EX28DRAFT_0491 at 482.475 kb on + strand, within EX28DRAFT_0491 at 482.518 kb on - strand, within EX28DRAFT_0491 at 482.518 kb on - strand, within EX28DRAFT_0491 at 483.059 kb on - strand, within EX28DRAFT_0491 at 483.059 kb on - strand, within EX28DRAFT_0491 at 483.134 kb on - strand, within EX28DRAFT_0491
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 479,408 + EX28DRAFT_0488 0.72 +0.4 479,409 - EX28DRAFT_0488 0.72 -0.1 479,449 + EX28DRAFT_0488 0.78 -0.5 479,504 - EX28DRAFT_0488 0.87 +0.1 479,533 - -0.0 479,548 - -1.9 479,548 - -1.5 479,548 - -0.6 479,548 - -0.5 479,559 - +0.2 479,559 - -0.1 480,384 + -0.1 480,384 + -1.2 480,385 - -2.4 480,385 - +0.8 480,485 + EX28DRAFT_0490 0.11 -0.3 480,899 + EX28DRAFT_0490 0.33 +0.1 480,900 - EX28DRAFT_0490 0.33 -3.2 481,083 - EX28DRAFT_0490 0.43 -0.3 481,263 - EX28DRAFT_0490 0.53 -0.7 481,281 + EX28DRAFT_0490 0.54 -2.3 481,281 + EX28DRAFT_0490 0.54 -2.3 481,282 - EX28DRAFT_0490 0.54 -0.6 481,282 - EX28DRAFT_0490 0.54 +0.7 481,283 + EX28DRAFT_0490 0.54 -0.7 481,328 + EX28DRAFT_0490 0.56 +0.1 481,380 - EX28DRAFT_0490 0.59 -0.5 481,516 + EX28DRAFT_0490 0.67 +0.5 481,539 - EX28DRAFT_0490 0.68 +0.4 481,539 - EX28DRAFT_0490 0.68 -1.1 481,539 - EX28DRAFT_0490 0.68 +0.7 481,543 - EX28DRAFT_0490 0.68 -0.1 481,677 - EX28DRAFT_0490 0.75 -1.1 481,677 - EX28DRAFT_0490 0.75 -1.0 481,736 + EX28DRAFT_0490 0.78 -0.5 481,740 + EX28DRAFT_0490 0.79 +1.5 481,740 + EX28DRAFT_0490 0.79 +0.6 481,741 - EX28DRAFT_0490 0.79 -0.8 481,802 + EX28DRAFT_0490 0.82 -0.7 481,803 - EX28DRAFT_0490 0.82 -0.2 481,815 - EX28DRAFT_0490 0.83 -1.2 481,838 - EX28DRAFT_0490 0.84 -0.2 481,975 + -0.1 481,975 + +1.3 482,002 - +1.5 482,002 - +0.2 482,134 - -1.7 482,243 - -1.0 482,246 + -0.2 482,410 - EX28DRAFT_0491 0.10 +0.1 482,418 - EX28DRAFT_0491 0.11 -0.9 482,418 - EX28DRAFT_0491 0.11 -0.5 482,450 + EX28DRAFT_0491 0.13 -1.0 482,475 + EX28DRAFT_0491 0.15 +0.6 482,518 - EX28DRAFT_0491 0.17 +0.3 482,518 - EX28DRAFT_0491 0.17 +0.3 483,059 - EX28DRAFT_0491 0.51 +1.2 483,059 - EX28DRAFT_0491 0.51 +0.5 483,134 - EX28DRAFT_0491 0.56 +0.3
Or see this region's nucleotide sequence