Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0478 and EX28DRAFT_0479 are separated by 168 nucleotides EX28DRAFT_0479 and EX28DRAFT_0480 overlap by 4 nucleotides
EX28DRAFT_0478: EX28DRAFT_0478 - Collagenase and related proteases, at 460,275 to 461,636
_0478
EX28DRAFT_0479: EX28DRAFT_0479 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 461,805 to 462,527
_0479
EX28DRAFT_0480: EX28DRAFT_0480 - Signal transduction histidine kinase, at 462,524 to 463,927
_0480
Position (kb) 461
462
463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 460.885 kb on + strand, within EX28DRAFT_0478 at 461.631 kb on - strand at 461.724 kb on + strand at 461.725 kb on - strand at 461.725 kb on - strand at 461.746 kb on - strand at 461.751 kb on + strand at 461.752 kb on - strand at 461.787 kb on - strand at 461.787 kb on - strand at 461.807 kb on - strand at 461.851 kb on + strand at 461.852 kb on - strand at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.209 kb on - strand, within EX28DRAFT_0479 at 462.342 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.382 kb on + strand, within EX28DRAFT_0479 at 462.383 kb on - strand, within EX28DRAFT_0479 at 462.439 kb on - strand, within EX28DRAFT_0479 at 462.442 kb on + strand, within EX28DRAFT_0479 at 462.528 kb on - strand at 462.528 kb on - strand at 462.539 kb on + strand at 462.557 kb on + strand at 462.557 kb on + strand at 462.558 kb on - strand at 462.563 kb on + strand at 462.564 kb on - strand at 462.564 kb on - strand at 462.568 kb on + strand at 462.569 kb on - strand at 462.617 kb on - strand at 462.980 kb on - strand, within EX28DRAFT_0480 at 462.980 kb on - strand, within EX28DRAFT_0480
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 460,885 + EX28DRAFT_0478 0.45 -0.8 461,631 - -0.0 461,724 + -0.5 461,725 - -1.6 461,725 - -1.5 461,746 - +0.8 461,751 + -0.1 461,752 - -1.1 461,787 - -1.0 461,787 - +0.6 461,807 - +0.3 461,851 + +0.7 461,852 - +0.2 462,209 - EX28DRAFT_0479 0.56 -1.3 462,209 - EX28DRAFT_0479 0.56 +0.5 462,209 - EX28DRAFT_0479 0.56 +0.9 462,342 + EX28DRAFT_0479 0.74 +1.5 462,382 + EX28DRAFT_0479 0.80 +0.5 462,382 + EX28DRAFT_0479 0.80 +0.0 462,383 - EX28DRAFT_0479 0.80 -0.9 462,439 - EX28DRAFT_0479 0.88 +0.2 462,442 + EX28DRAFT_0479 0.88 -0.0 462,528 - +0.3 462,528 - +0.9 462,539 + +0.6 462,557 + +0.5 462,557 + -1.9 462,558 - -3.3 462,563 + -1.7 462,564 - +1.1 462,564 - +1.9 462,568 + -0.0 462,569 - -1.4 462,617 - +1.6 462,980 - EX28DRAFT_0480 0.32 +0.4 462,980 - EX28DRAFT_0480 0.32 +0.2
Or see this region's nucleotide sequence