Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0449

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0448 and EX28DRAFT_0449 are separated by 336 nucleotidesEX28DRAFT_0449 and EX28DRAFT_0450 are separated by 238 nucleotides EX28DRAFT_0448: EX28DRAFT_0448 - 2,4-diaminobutyrate 4-transaminases, at 429,885 to 431,258 _0448 EX28DRAFT_0449: EX28DRAFT_0449 - transcriptional regulator, LacI family, at 431,595 to 432,602 _0449 EX28DRAFT_0450: EX28DRAFT_0450 - oligosaccharide:H+ symporter, at 432,841 to 434,082 _0450 Position (kb) 431 432 433Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 430.596 kb on - strand, within EX28DRAFT_0448at 430.637 kb on - strand, within EX28DRAFT_0448at 430.639 kb on + strand, within EX28DRAFT_0448at 430.639 kb on + strand, within EX28DRAFT_0448at 430.639 kb on + strand, within EX28DRAFT_0448at 430.691 kb on - strand, within EX28DRAFT_0448at 430.731 kb on - strand, within EX28DRAFT_0448at 430.907 kb on - strand, within EX28DRAFT_0448at 430.907 kb on - strand, within EX28DRAFT_0448at 430.943 kb on - strand, within EX28DRAFT_0448at 430.970 kb on + strand, within EX28DRAFT_0448at 430.985 kb on + strand, within EX28DRAFT_0448at 430.986 kb on - strand, within EX28DRAFT_0448at 431.007 kb on - strand, within EX28DRAFT_0448at 431.077 kb on - strand, within EX28DRAFT_0448at 431.089 kb on + strand, within EX28DRAFT_0448at 431.090 kb on - strand, within EX28DRAFT_0448at 431.090 kb on - strand, within EX28DRAFT_0448at 431.096 kb on + strand, within EX28DRAFT_0448at 431.132 kb on + strandat 431.161 kb on + strandat 431.204 kb on - strandat 431.229 kb on + strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.230 kb on - strandat 431.271 kb on - strandat 431.351 kb on + strandat 431.380 kb on + strandat 431.454 kb on + strandat 431.565 kb on + strandat 431.597 kb on - strandat 431.675 kb on + strandat 431.676 kb on - strandat 431.676 kb on - strandat 431.676 kb on - strandat 431.679 kb on - strandat 431.765 kb on + strand, within EX28DRAFT_0449at 431.832 kb on + strand, within EX28DRAFT_0449at 431.832 kb on + strand, within EX28DRAFT_0449at 431.832 kb on + strand, within EX28DRAFT_0449at 431.833 kb on - strand, within EX28DRAFT_0449at 431.922 kb on - strand, within EX28DRAFT_0449at 431.929 kb on + strand, within EX28DRAFT_0449at 431.951 kb on + strand, within EX28DRAFT_0449at 431.951 kb on + strand, within EX28DRAFT_0449at 431.952 kb on - strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.953 kb on + strand, within EX28DRAFT_0449at 431.954 kb on - strand, within EX28DRAFT_0449at 431.954 kb on - strand, within EX28DRAFT_0449at 432.105 kb on - strand, within EX28DRAFT_0449at 432.107 kb on - strand, within EX28DRAFT_0449at 432.133 kb on + strand, within EX28DRAFT_0449at 432.219 kb on + strand, within EX28DRAFT_0449at 432.219 kb on + strand, within EX28DRAFT_0449at 432.220 kb on - strand, within EX28DRAFT_0449at 432.235 kb on + strand, within EX28DRAFT_0449at 432.278 kb on + strand, within EX28DRAFT_0449at 432.305 kb on + strand, within EX28DRAFT_0449at 432.305 kb on + strand, within EX28DRAFT_0449at 432.305 kb on + strand, within EX28DRAFT_0449at 432.306 kb on - strand, within EX28DRAFT_0449at 432.306 kb on - strand, within EX28DRAFT_0449at 432.353 kb on + strand, within EX28DRAFT_0449at 432.354 kb on - strand, within EX28DRAFT_0449at 432.405 kb on + strand, within EX28DRAFT_0449at 432.406 kb on - strand, within EX28DRAFT_0449at 432.536 kb on + strandat 432.565 kb on - strandat 432.606 kb on - strandat 432.622 kb on + strandat 432.623 kb on - strandat 432.639 kb on - strandat 432.645 kb on - strandat 432.707 kb on + strandat 432.887 kb on + strandat 432.988 kb on + strand, within EX28DRAFT_0450at 432.989 kb on - strand, within EX28DRAFT_0450at 432.989 kb on - strand, within EX28DRAFT_0450at 432.989 kb on - strand, within EX28DRAFT_0450at 433.144 kb on - strand, within EX28DRAFT_0450at 433.530 kb on + strand, within EX28DRAFT_0450at 433.531 kb on - strand, within EX28DRAFT_0450at 433.534 kb on + strand, within EX28DRAFT_0450at 433.564 kb on + strand, within EX28DRAFT_0450at 433.564 kb on + strand, within EX28DRAFT_0450

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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430,596 - EX28DRAFT_0448 0.52 -1.5
430,637 - EX28DRAFT_0448 0.55 -1.5
430,639 + EX28DRAFT_0448 0.55 -1.2
430,639 + EX28DRAFT_0448 0.55 -2.4
430,639 + EX28DRAFT_0448 0.55 -1.5
430,691 - EX28DRAFT_0448 0.59 -0.8
430,731 - EX28DRAFT_0448 0.62 -0.9
430,907 - EX28DRAFT_0448 0.74 -0.5
430,907 - EX28DRAFT_0448 0.74 -1.5
430,943 - EX28DRAFT_0448 0.77 -0.9
430,970 + EX28DRAFT_0448 0.79 -2.5
430,985 + EX28DRAFT_0448 0.80 +1.5
430,986 - EX28DRAFT_0448 0.80 +0.3
431,007 - EX28DRAFT_0448 0.82 -0.3
431,077 - EX28DRAFT_0448 0.87 +0.1
431,089 + EX28DRAFT_0448 0.88 -1.2
431,090 - EX28DRAFT_0448 0.88 -0.3
431,090 - EX28DRAFT_0448 0.88 -0.6
431,096 + EX28DRAFT_0448 0.88 -0.1
431,132 + -5.2
431,161 + -1.0
431,204 - -0.7
431,229 + -0.6
431,230 - -0.8
431,230 - -1.4
431,230 - +0.5
431,230 - +0.4
431,230 - -1.7
431,271 - -2.5
431,351 + -1.7
431,380 + -1.1
431,454 + -1.3
431,565 + +0.4
431,597 - +0.6
431,675 + +1.8
431,676 - +0.2
431,676 - +0.4
431,676 - +0.8
431,679 - +0.1
431,765 + EX28DRAFT_0449 0.17 +0.2
431,832 + EX28DRAFT_0449 0.24 +0.0
431,832 + EX28DRAFT_0449 0.24 +0.9
431,832 + EX28DRAFT_0449 0.24 +0.6
431,833 - EX28DRAFT_0449 0.24 -0.6
431,922 - EX28DRAFT_0449 0.32 -0.6
431,929 + EX28DRAFT_0449 0.33 +0.3
431,951 + EX28DRAFT_0449 0.35 +0.3
431,951 + EX28DRAFT_0449 0.35 +0.9
431,952 - EX28DRAFT_0449 0.35 -0.2
431,953 + EX28DRAFT_0449 0.36 -0.1
431,953 + EX28DRAFT_0449 0.36 +0.2
431,953 + EX28DRAFT_0449 0.36 +0.4
431,953 + EX28DRAFT_0449 0.36 +0.2
431,953 + EX28DRAFT_0449 0.36 -0.0
431,953 + EX28DRAFT_0449 0.36 -1.8
431,953 + EX28DRAFT_0449 0.36 +0.9
431,954 - EX28DRAFT_0449 0.36 -0.2
431,954 - EX28DRAFT_0449 0.36 +0.4
432,105 - EX28DRAFT_0449 0.51 +1.1
432,107 - EX28DRAFT_0449 0.51 +0.3
432,133 + EX28DRAFT_0449 0.53 +0.2
432,219 + EX28DRAFT_0449 0.62 -0.1
432,219 + EX28DRAFT_0449 0.62 +0.9
432,220 - EX28DRAFT_0449 0.62 -0.2
432,235 + EX28DRAFT_0449 0.63 +0.1
432,278 + EX28DRAFT_0449 0.68 -2.6
432,305 + EX28DRAFT_0449 0.70 -0.0
432,305 + EX28DRAFT_0449 0.70 +0.3
432,305 + EX28DRAFT_0449 0.70 -1.8
432,306 - EX28DRAFT_0449 0.71 -0.5
432,306 - EX28DRAFT_0449 0.71 +0.3
432,353 + EX28DRAFT_0449 0.75 +0.3
432,354 - EX28DRAFT_0449 0.75 +0.2
432,405 + EX28DRAFT_0449 0.80 -0.8
432,406 - EX28DRAFT_0449 0.80 -0.1
432,536 + -0.1
432,565 - +0.9
432,606 - -0.0
432,622 + +0.0
432,623 - -0.1
432,639 - -0.1
432,645 - -1.2
432,707 + -0.9
432,887 + -0.2
432,988 + EX28DRAFT_0450 0.12 +0.7
432,989 - EX28DRAFT_0450 0.12 -0.1
432,989 - EX28DRAFT_0450 0.12 -0.0
432,989 - EX28DRAFT_0450 0.12 +1.2
433,144 - EX28DRAFT_0450 0.24 -0.9
433,530 + EX28DRAFT_0450 0.55 -0.4
433,531 - EX28DRAFT_0450 0.56 -0.6
433,534 + EX28DRAFT_0450 0.56 -0.3
433,564 + EX28DRAFT_0450 0.58 -0.9
433,564 + EX28DRAFT_0450 0.58 +0.0

Or see this region's nucleotide sequence