Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0442

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0440 and EX28DRAFT_0441 are separated by 94 nucleotidesEX28DRAFT_0441 and EX28DRAFT_0442 overlap by 26 nucleotidesEX28DRAFT_0442 and EX28DRAFT_0443 are separated by 487 nucleotides EX28DRAFT_0440: EX28DRAFT_0440 - ATPases involved in chromosome partitioning, at 421,549 to 422,658 _0440 EX28DRAFT_0441: EX28DRAFT_0441 - Acetyltransferases, at 422,753 to 423,208 _0441 EX28DRAFT_0442: EX28DRAFT_0442 - Predicted integral membrane protein, at 423,183 to 423,515 _0442 EX28DRAFT_0443: EX28DRAFT_0443 - Periplasmic protein involved in polysaccharide export, at 424,003 to 425,143 _0443 Position (kb) 423 424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 422.201 kb on - strand, within EX28DRAFT_0440at 422.201 kb on - strand, within EX28DRAFT_0440at 422.290 kb on - strand, within EX28DRAFT_0440at 422.421 kb on + strand, within EX28DRAFT_0440at 422.422 kb on - strand, within EX28DRAFT_0440at 422.461 kb on + strand, within EX28DRAFT_0440at 422.462 kb on - strand, within EX28DRAFT_0440at 422.462 kb on - strand, within EX28DRAFT_0440at 422.462 kb on - strand, within EX28DRAFT_0440at 422.462 kb on - strand, within EX28DRAFT_0440at 422.778 kb on + strandat 422.778 kb on + strandat 422.779 kb on - strandat 422.779 kb on - strandat 422.779 kb on - strandat 422.779 kb on - strandat 422.782 kb on - strandat 422.782 kb on - strandat 422.872 kb on + strand, within EX28DRAFT_0441at 423.200 kb on + strandat 423.200 kb on + strandat 423.200 kb on + strandat 423.212 kb on - strandat 423.253 kb on + strand, within EX28DRAFT_0442at 423.253 kb on + strand, within EX28DRAFT_0442at 423.253 kb on + strand, within EX28DRAFT_0442at 423.253 kb on + strand, within EX28DRAFT_0442at 423.254 kb on - strand, within EX28DRAFT_0442at 423.254 kb on - strand, within EX28DRAFT_0442at 423.268 kb on + strand, within EX28DRAFT_0442at 423.268 kb on + strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.269 kb on - strand, within EX28DRAFT_0442at 423.309 kb on + strand, within EX28DRAFT_0442at 423.310 kb on - strand, within EX28DRAFT_0442at 423.310 kb on - strand, within EX28DRAFT_0442at 423.316 kb on + strand, within EX28DRAFT_0442at 423.331 kb on + strand, within EX28DRAFT_0442at 423.412 kb on + strand, within EX28DRAFT_0442at 423.413 kb on - strand, within EX28DRAFT_0442at 423.480 kb on + strand, within EX28DRAFT_0442at 423.481 kb on - strand, within EX28DRAFT_0442at 423.483 kb on + strandat 423.484 kb on - strandat 423.484 kb on - strandat 423.491 kb on + strandat 423.593 kb on - strandat 423.606 kb on - strandat 423.800 kb on + strandat 423.821 kb on + strandat 423.822 kb on - strandat 423.887 kb on + strandat 424.332 kb on + strand, within EX28DRAFT_0443at 424.332 kb on + strand, within EX28DRAFT_0443at 424.371 kb on + strand, within EX28DRAFT_0443at 424.382 kb on - strand, within EX28DRAFT_0443at 424.395 kb on + strand, within EX28DRAFT_0443

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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422,201 - EX28DRAFT_0440 0.59 -1.7
422,201 - EX28DRAFT_0440 0.59 -3.4
422,290 - EX28DRAFT_0440 0.67 -3.8
422,421 + EX28DRAFT_0440 0.79 -0.7
422,422 - EX28DRAFT_0440 0.79 -1.7
422,461 + EX28DRAFT_0440 0.82 -4.7
422,462 - EX28DRAFT_0440 0.82 -1.3
422,462 - EX28DRAFT_0440 0.82 -2.6
422,462 - EX28DRAFT_0440 0.82 -2.8
422,462 - EX28DRAFT_0440 0.82 -1.5
422,778 + -0.6
422,778 + -0.1
422,779 - -1.2
422,779 - -1.5
422,779 - -0.6
422,779 - -0.2
422,782 - +0.3
422,782 - +0.3
422,872 + EX28DRAFT_0441 0.26 +0.2
423,200 + +0.8
423,200 + +0.3
423,200 + +0.1
423,212 - -0.4
423,253 + EX28DRAFT_0442 0.21 +0.1
423,253 + EX28DRAFT_0442 0.21 +0.0
423,253 + EX28DRAFT_0442 0.21 +0.8
423,253 + EX28DRAFT_0442 0.21 +0.7
423,254 - EX28DRAFT_0442 0.21 +0.5
423,254 - EX28DRAFT_0442 0.21 -0.2
423,268 + EX28DRAFT_0442 0.26 +0.3
423,268 + EX28DRAFT_0442 0.26 +0.1
423,269 - EX28DRAFT_0442 0.26 +0.5
423,269 - EX28DRAFT_0442 0.26 -0.0
423,269 - EX28DRAFT_0442 0.26 +0.3
423,269 - EX28DRAFT_0442 0.26 +0.4
423,309 + EX28DRAFT_0442 0.38 +1.3
423,310 - EX28DRAFT_0442 0.38 -0.1
423,310 - EX28DRAFT_0442 0.38 +0.5
423,316 + EX28DRAFT_0442 0.40 +0.2
423,331 + EX28DRAFT_0442 0.44 -0.5
423,412 + EX28DRAFT_0442 0.69 -0.5
423,413 - EX28DRAFT_0442 0.69 -1.2
423,480 + EX28DRAFT_0442 0.89 +0.3
423,481 - EX28DRAFT_0442 0.89 -0.3
423,483 + -0.1
423,484 - -0.1
423,484 - +0.0
423,491 + -0.2
423,593 - -0.2
423,606 - +0.2
423,800 + -0.4
423,821 + -0.4
423,822 - -0.4
423,887 + -0.2
424,332 + EX28DRAFT_0443 0.29 +1.1
424,332 + EX28DRAFT_0443 0.29 +0.1
424,371 + EX28DRAFT_0443 0.32 -0.6
424,382 - EX28DRAFT_0443 0.33 +0.6
424,395 + EX28DRAFT_0443 0.34 +0.2

Or see this region's nucleotide sequence