Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0422 and EX28DRAFT_0423 are separated by 50 nucleotides EX28DRAFT_0423 and EX28DRAFT_0424 are separated by 84 nucleotides EX28DRAFT_0424 and EX28DRAFT_0425 are separated by 157 nucleotides EX28DRAFT_0425 and EX28DRAFT_0426 are separated by 167 nucleotides
EX28DRAFT_0422: EX28DRAFT_0422 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 401,620 to 403,038
_0422
EX28DRAFT_0423: EX28DRAFT_0423 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 403,089 to 403,853
_0423
EX28DRAFT_0424: EX28DRAFT_0424 - Uncharacterized membrane-associated protein, at 403,938 to 404,510
_0424
EX28DRAFT_0425: EX28DRAFT_0425 - Protein of unknown function (DUF1282), at 404,668 to 405,255
_0425
EX28DRAFT_0426: EX28DRAFT_0426 - D-alanyl-D-alanine carboxypeptidase, at 405,423 to 406,346
_0426
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 402.980 kb on - strand at 403.049 kb on + strand at 403.049 kb on + strand at 403.053 kb on + strand at 403.054 kb on - strand at 403.055 kb on + strand at 403.055 kb on + strand at 403.056 kb on - strand at 403.056 kb on - strand at 403.056 kb on - strand at 403.060 kb on - strand at 403.060 kb on - strand at 403.060 kb on - strand at 403.271 kb on - strand, within EX28DRAFT_0423 at 403.271 kb on - strand, within EX28DRAFT_0423 at 403.799 kb on + strand at 403.852 kb on - strand at 403.911 kb on - strand at 404.207 kb on + strand, within EX28DRAFT_0424 at 404.207 kb on + strand, within EX28DRAFT_0424 at 404.208 kb on - strand, within EX28DRAFT_0424 at 404.208 kb on - strand, within EX28DRAFT_0424 at 404.208 kb on - strand, within EX28DRAFT_0424 at 404.234 kb on - strand, within EX28DRAFT_0424 at 404.332 kb on + strand, within EX28DRAFT_0424 at 404.492 kb on + strand at 404.493 kb on - strand at 404.511 kb on + strand at 404.511 kb on + strand at 404.511 kb on + strand at 404.523 kb on - strand at 404.523 kb on - strand at 404.546 kb on - strand at 404.551 kb on + strand at 404.551 kb on + strand at 404.551 kb on + strand at 404.551 kb on + strand at 404.552 kb on - strand at 404.552 kb on - strand at 404.553 kb on + strand at 404.553 kb on + strand at 404.553 kb on + strand at 404.554 kb on - strand at 404.554 kb on - strand at 404.625 kb on + strand at 404.625 kb on + strand at 404.627 kb on + strand at 404.627 kb on + strand at 404.627 kb on + strand at 404.628 kb on - strand at 404.628 kb on - strand at 404.628 kb on - strand at 404.631 kb on + strand at 404.632 kb on - strand at 404.632 kb on - strand at 404.792 kb on + strand, within EX28DRAFT_0425 at 404.792 kb on + strand, within EX28DRAFT_0425 at 405.023 kb on + strand, within EX28DRAFT_0425 at 405.078 kb on + strand, within EX28DRAFT_0425 at 405.079 kb on - strand, within EX28DRAFT_0425 at 405.079 kb on - strand, within EX28DRAFT_0425 at 405.091 kb on + strand, within EX28DRAFT_0425 at 405.092 kb on - strand, within EX28DRAFT_0425 at 405.092 kb on - strand, within EX28DRAFT_0425 at 405.109 kb on + strand, within EX28DRAFT_0425 at 405.142 kb on - strand, within EX28DRAFT_0425 at 405.276 kb on - strand at 405.383 kb on + strand at 405.403 kb on + strand at 405.404 kb on - strand at 405.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 402,980 - -0.1 403,049 + +0.0 403,049 + +0.4 403,053 + -0.0 403,054 - +0.6 403,055 + +0.4 403,055 + -0.0 403,056 - +1.6 403,056 - +0.2 403,056 - -0.1 403,060 - -0.1 403,060 - +0.5 403,060 - +2.4 403,271 - EX28DRAFT_0423 0.24 +0.3 403,271 - EX28DRAFT_0423 0.24 +0.7 403,799 + +0.3 403,852 - +0.7 403,911 - -0.4 404,207 + EX28DRAFT_0424 0.47 +0.5 404,207 + EX28DRAFT_0424 0.47 -0.1 404,208 - EX28DRAFT_0424 0.47 +0.7 404,208 - EX28DRAFT_0424 0.47 -0.3 404,208 - EX28DRAFT_0424 0.47 +0.3 404,234 - EX28DRAFT_0424 0.52 +0.3 404,332 + EX28DRAFT_0424 0.69 -0.2 404,492 + -0.4 404,493 - -0.5 404,511 + -0.6 404,511 + -0.0 404,511 + -0.6 404,523 - -0.6 404,523 - +0.6 404,546 - -0.5 404,551 + +0.3 404,551 + -0.5 404,551 + +0.0 404,551 + +0.0 404,552 - -0.3 404,552 - -0.7 404,553 + +0.1 404,553 + -0.5 404,553 + +0.0 404,554 - -0.7 404,554 - +0.0 404,625 + +0.3 404,625 + +1.1 404,627 + +1.0 404,627 + +0.5 404,627 + -0.7 404,628 - +0.3 404,628 - -0.0 404,628 - -1.7 404,631 + +0.2 404,632 - +0.2 404,632 - +0.7 404,792 + EX28DRAFT_0425 0.21 -0.1 404,792 + EX28DRAFT_0425 0.21 +0.8 405,023 + EX28DRAFT_0425 0.60 -0.1 405,078 + EX28DRAFT_0425 0.70 -0.1 405,079 - EX28DRAFT_0425 0.70 +0.4 405,079 - EX28DRAFT_0425 0.70 +1.2 405,091 + EX28DRAFT_0425 0.72 -1.9 405,092 - EX28DRAFT_0425 0.72 +0.7 405,092 - EX28DRAFT_0425 0.72 -0.8 405,109 + EX28DRAFT_0425 0.75 +0.4 405,142 - EX28DRAFT_0425 0.81 +1.4 405,276 - -0.4 405,383 + -0.2 405,403 + +0.2 405,404 - -0.1 405,450 - +1.1
Or see this region's nucleotide sequence