Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0422 and EX28DRAFT_0423 are separated by 50 nucleotides EX28DRAFT_0423 and EX28DRAFT_0424 are separated by 84 nucleotides EX28DRAFT_0424 and EX28DRAFT_0425 are separated by 157 nucleotides
EX28DRAFT_0422: EX28DRAFT_0422 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 401,620 to 403,038
_0422
EX28DRAFT_0423: EX28DRAFT_0423 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 403,089 to 403,853
_0423
EX28DRAFT_0424: EX28DRAFT_0424 - Uncharacterized membrane-associated protein, at 403,938 to 404,510
_0424
EX28DRAFT_0425: EX28DRAFT_0425 - Protein of unknown function (DUF1282), at 404,668 to 405,255
_0425
Position (kb) 403
404 Strain fitness (log2 ratio) -1
0
1
2 at 402.178 kb on + strand, within EX28DRAFT_0422 at 402.179 kb on - strand, within EX28DRAFT_0422 at 402.248 kb on + strand, within EX28DRAFT_0422 at 402.249 kb on - strand, within EX28DRAFT_0422 at 402.249 kb on - strand, within EX28DRAFT_0422 at 402.271 kb on + strand, within EX28DRAFT_0422 at 402.374 kb on + strand, within EX28DRAFT_0422 at 402.420 kb on + strand, within EX28DRAFT_0422 at 402.517 kb on + strand, within EX28DRAFT_0422 at 402.518 kb on - strand, within EX28DRAFT_0422 at 402.565 kb on + strand, within EX28DRAFT_0422 at 402.566 kb on - strand, within EX28DRAFT_0422 at 402.729 kb on + strand, within EX28DRAFT_0422 at 402.729 kb on + strand, within EX28DRAFT_0422 at 402.730 kb on - strand, within EX28DRAFT_0422 at 402.730 kb on - strand, within EX28DRAFT_0422 at 402.749 kb on - strand, within EX28DRAFT_0422 at 402.980 kb on - strand at 403.049 kb on + strand at 403.049 kb on + strand at 403.053 kb on + strand at 403.054 kb on - strand at 403.055 kb on + strand at 403.055 kb on + strand at 403.056 kb on - strand at 403.056 kb on - strand at 403.056 kb on - strand at 403.060 kb on - strand at 403.060 kb on - strand at 403.060 kb on - strand at 403.271 kb on - strand, within EX28DRAFT_0423 at 403.271 kb on - strand, within EX28DRAFT_0423 at 403.799 kb on + strand at 403.852 kb on - strand at 403.911 kb on - strand at 404.207 kb on + strand, within EX28DRAFT_0424 at 404.207 kb on + strand, within EX28DRAFT_0424 at 404.208 kb on - strand, within EX28DRAFT_0424 at 404.208 kb on - strand, within EX28DRAFT_0424 at 404.208 kb on - strand, within EX28DRAFT_0424 at 404.234 kb on - strand, within EX28DRAFT_0424 at 404.332 kb on + strand, within EX28DRAFT_0424 at 404.492 kb on + strand at 404.493 kb on - strand at 404.511 kb on + strand at 404.511 kb on + strand at 404.511 kb on + strand at 404.523 kb on - strand at 404.523 kb on - strand at 404.546 kb on - strand at 404.551 kb on + strand at 404.551 kb on + strand at 404.551 kb on + strand at 404.551 kb on + strand at 404.552 kb on - strand at 404.552 kb on - strand at 404.553 kb on + strand at 404.553 kb on + strand at 404.553 kb on + strand at 404.554 kb on - strand at 404.554 kb on - strand at 404.625 kb on + strand at 404.625 kb on + strand at 404.627 kb on + strand at 404.627 kb on + strand at 404.627 kb on + strand at 404.628 kb on - strand at 404.628 kb on - strand at 404.628 kb on - strand at 404.631 kb on + strand at 404.632 kb on - strand at 404.632 kb on - strand at 404.792 kb on + strand, within EX28DRAFT_0425 at 404.792 kb on + strand, within EX28DRAFT_0425
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 402,178 + EX28DRAFT_0422 0.39 +0.2 402,179 - EX28DRAFT_0422 0.39 -0.7 402,248 + EX28DRAFT_0422 0.44 -0.1 402,249 - EX28DRAFT_0422 0.44 -0.8 402,249 - EX28DRAFT_0422 0.44 -0.0 402,271 + EX28DRAFT_0422 0.46 -0.7 402,374 + EX28DRAFT_0422 0.53 -1.1 402,420 + EX28DRAFT_0422 0.56 +2.1 402,517 + EX28DRAFT_0422 0.63 -0.1 402,518 - EX28DRAFT_0422 0.63 +0.5 402,565 + EX28DRAFT_0422 0.67 -0.4 402,566 - EX28DRAFT_0422 0.67 -0.1 402,729 + EX28DRAFT_0422 0.78 -0.0 402,729 + EX28DRAFT_0422 0.78 +0.5 402,730 - EX28DRAFT_0422 0.78 +0.4 402,730 - EX28DRAFT_0422 0.78 +0.2 402,749 - EX28DRAFT_0422 0.80 +0.3 402,980 - -0.1 403,049 + +0.0 403,049 + +0.4 403,053 + -0.0 403,054 - +0.6 403,055 + +0.4 403,055 + -0.0 403,056 - +1.6 403,056 - +0.2 403,056 - -0.1 403,060 - -0.1 403,060 - +0.5 403,060 - +2.4 403,271 - EX28DRAFT_0423 0.24 +0.3 403,271 - EX28DRAFT_0423 0.24 +0.7 403,799 + +0.3 403,852 - +0.7 403,911 - -0.4 404,207 + EX28DRAFT_0424 0.47 +0.5 404,207 + EX28DRAFT_0424 0.47 -0.1 404,208 - EX28DRAFT_0424 0.47 +0.7 404,208 - EX28DRAFT_0424 0.47 -0.3 404,208 - EX28DRAFT_0424 0.47 +0.3 404,234 - EX28DRAFT_0424 0.52 +0.3 404,332 + EX28DRAFT_0424 0.69 -0.2 404,492 + -0.4 404,493 - -0.5 404,511 + -0.6 404,511 + -0.0 404,511 + -0.6 404,523 - -0.6 404,523 - +0.6 404,546 - -0.5 404,551 + +0.3 404,551 + -0.5 404,551 + +0.0 404,551 + +0.0 404,552 - -0.3 404,552 - -0.7 404,553 + +0.1 404,553 + -0.5 404,553 + +0.0 404,554 - -0.7 404,554 - +0.0 404,625 + +0.3 404,625 + +1.1 404,627 + +1.0 404,627 + +0.5 404,627 + -0.7 404,628 - +0.3 404,628 - -0.0 404,628 - -1.7 404,631 + +0.2 404,632 - +0.2 404,632 - +0.7 404,792 + EX28DRAFT_0425 0.21 -0.1 404,792 + EX28DRAFT_0425 0.21 +0.8
Or see this region's nucleotide sequence