Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0414 and EX28DRAFT_0415 are separated by 191 nucleotides EX28DRAFT_0415 and EX28DRAFT_0416 are separated by 59 nucleotides EX28DRAFT_0416 and EX28DRAFT_0417 are separated by 41 nucleotides
EX28DRAFT_0414: EX28DRAFT_0414 - Putative effector of murein hydrolase LrgA, at 392,113 to 392,508
_0414
EX28DRAFT_0415: EX28DRAFT_0415 - GMP synthase - Glutamine amidotransferase domain, at 392,700 to 393,416
_0415
EX28DRAFT_0416: EX28DRAFT_0416 - AraC-type DNA-binding domain-containing proteins, at 393,476 to 394,273
_0416
EX28DRAFT_0417: EX28DRAFT_0417 - tRNA-dihydrouridine synthase, at 394,315 to 395,247
_0417
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 392.514 kb on + strand at 392.590 kb on + strand at 392.591 kb on - strand at 392.591 kb on - strand at 392.620 kb on - strand at 392.912 kb on - strand, within EX28DRAFT_0415 at 392.945 kb on - strand, within EX28DRAFT_0415 at 392.981 kb on + strand, within EX28DRAFT_0415 at 392.982 kb on - strand, within EX28DRAFT_0415 at 392.982 kb on - strand, within EX28DRAFT_0415 at 393.175 kb on - strand, within EX28DRAFT_0415 at 393.186 kb on + strand, within EX28DRAFT_0415 at 393.186 kb on + strand, within EX28DRAFT_0415 at 393.328 kb on + strand, within EX28DRAFT_0415 at 393.335 kb on + strand, within EX28DRAFT_0415 at 393.336 kb on - strand, within EX28DRAFT_0415 at 393.338 kb on + strand, within EX28DRAFT_0415 at 393.434 kb on - strand at 393.439 kb on + strand at 393.440 kb on - strand at 393.453 kb on + strand at 393.453 kb on + strand at 393.454 kb on - strand at 393.454 kb on - strand at 393.541 kb on + strand at 393.541 kb on + strand at 393.541 kb on + strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.542 kb on - strand at 393.545 kb on + strand at 393.547 kb on + strand at 393.652 kb on - strand, within EX28DRAFT_0416 at 393.652 kb on - strand, within EX28DRAFT_0416 at 393.699 kb on - strand, within EX28DRAFT_0416 at 393.931 kb on - strand, within EX28DRAFT_0416 at 393.954 kb on + strand, within EX28DRAFT_0416 at 394.078 kb on + strand, within EX28DRAFT_0416 at 394.271 kb on + strand at 394.285 kb on + strand at 394.285 kb on + strand at 394.285 kb on + strand at 394.308 kb on + strand at 394.315 kb on - strand at 394.390 kb on + strand at 394.472 kb on + strand, within EX28DRAFT_0417 at 394.473 kb on - strand, within EX28DRAFT_0417 at 394.840 kb on + strand, within EX28DRAFT_0417 at 394.858 kb on - strand, within EX28DRAFT_0417 at 395.024 kb on + strand, within EX28DRAFT_0417 at 395.029 kb on + strand, within EX28DRAFT_0417 at 395.029 kb on + strand, within EX28DRAFT_0417 at 395.116 kb on + strand, within EX28DRAFT_0417 at 395.117 kb on - strand, within EX28DRAFT_0417
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 392,514 + +1.3 392,590 + +1.4 392,591 - -0.4 392,591 - -0.2 392,620 - -0.0 392,912 - EX28DRAFT_0415 0.30 -0.9 392,945 - EX28DRAFT_0415 0.34 +0.2 392,981 + EX28DRAFT_0415 0.39 -1.1 392,982 - EX28DRAFT_0415 0.39 +2.6 392,982 - EX28DRAFT_0415 0.39 +0.2 393,175 - EX28DRAFT_0415 0.66 +0.8 393,186 + EX28DRAFT_0415 0.68 +2.2 393,186 + EX28DRAFT_0415 0.68 -0.5 393,328 + EX28DRAFT_0415 0.88 -0.2 393,335 + EX28DRAFT_0415 0.89 +1.7 393,336 - EX28DRAFT_0415 0.89 +0.1 393,338 + EX28DRAFT_0415 0.89 +1.9 393,434 - +0.1 393,439 + +0.2 393,440 - -0.7 393,453 + +0.2 393,453 + -0.9 393,454 - -1.8 393,454 - -0.7 393,541 + -0.2 393,541 + -0.1 393,541 + -0.3 393,542 - +0.7 393,542 - -0.7 393,542 - +0.9 393,542 - +0.7 393,542 - +0.1 393,542 - -0.4 393,545 + +0.4 393,547 + -0.2 393,652 - EX28DRAFT_0416 0.22 -0.0 393,652 - EX28DRAFT_0416 0.22 -1.2 393,699 - EX28DRAFT_0416 0.28 +2.2 393,931 - EX28DRAFT_0416 0.57 +0.2 393,954 + EX28DRAFT_0416 0.60 +0.5 394,078 + EX28DRAFT_0416 0.75 +0.3 394,271 + -0.8 394,285 + -1.2 394,285 + -0.8 394,285 + +0.1 394,308 + +0.2 394,315 - +0.6 394,390 + +0.7 394,472 + EX28DRAFT_0417 0.17 +0.4 394,473 - EX28DRAFT_0417 0.17 +1.1 394,840 + EX28DRAFT_0417 0.56 +0.4 394,858 - EX28DRAFT_0417 0.58 -0.1 395,024 + EX28DRAFT_0417 0.76 -0.1 395,029 + EX28DRAFT_0417 0.77 +0.3 395,029 + EX28DRAFT_0417 0.77 +0.4 395,116 + EX28DRAFT_0417 0.86 +0.8 395,117 - EX28DRAFT_0417 0.86 +0.4
Or see this region's nucleotide sequence