Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0407

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0406 and EX28DRAFT_0407 are separated by 295 nucleotidesEX28DRAFT_0407 and EX28DRAFT_0408 are separated by 79 nucleotides EX28DRAFT_0406: EX28DRAFT_0406 - Transcriptional regulators, at 383,059 to 384,081 _0406 EX28DRAFT_0407: EX28DRAFT_0407 - ABC-type sugar transport system, periplasmic component, at 384,377 to 385,375 _0407 EX28DRAFT_0408: EX28DRAFT_0408 - ABC-type sugar transport system, ATPase component, at 385,455 to 386,975 _0408 Position (kb) 384 385 386Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 383.406 kb on + strand, within EX28DRAFT_0406at 383.461 kb on - strand, within EX28DRAFT_0406at 383.619 kb on + strand, within EX28DRAFT_0406at 383.620 kb on - strand, within EX28DRAFT_0406at 383.772 kb on + strand, within EX28DRAFT_0406at 383.772 kb on + strand, within EX28DRAFT_0406at 383.789 kb on - strand, within EX28DRAFT_0406at 383.858 kb on + strand, within EX28DRAFT_0406at 383.859 kb on - strand, within EX28DRAFT_0406at 384.129 kb on + strandat 384.150 kb on - strandat 384.184 kb on + strandat 384.185 kb on - strandat 384.207 kb on + strandat 384.282 kb on + strandat 384.373 kb on + strandat 384.382 kb on + strandat 384.382 kb on + strandat 384.383 kb on - strandat 384.473 kb on + strandat 384.475 kb on + strandat 384.475 kb on + strandat 384.475 kb on + strandat 384.476 kb on - strandat 384.476 kb on - strandat 384.476 kb on - strandat 384.479 kb on + strand, within EX28DRAFT_0407at 384.479 kb on + strand, within EX28DRAFT_0407at 384.749 kb on + strand, within EX28DRAFT_0407at 384.750 kb on - strand, within EX28DRAFT_0407at 384.750 kb on - strand, within EX28DRAFT_0407at 384.762 kb on - strand, within EX28DRAFT_0407at 384.764 kb on + strand, within EX28DRAFT_0407at 384.764 kb on + strand, within EX28DRAFT_0407at 384.765 kb on - strand, within EX28DRAFT_0407at 384.796 kb on + strand, within EX28DRAFT_0407at 384.797 kb on - strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.926 kb on + strand, within EX28DRAFT_0407at 384.927 kb on - strand, within EX28DRAFT_0407at 384.927 kb on - strand, within EX28DRAFT_0407at 384.978 kb on + strand, within EX28DRAFT_0407at 384.979 kb on - strand, within EX28DRAFT_0407at 384.979 kb on - strand, within EX28DRAFT_0407at 385.101 kb on + strand, within EX28DRAFT_0407at 385.150 kb on - strand, within EX28DRAFT_0407at 385.328 kb on + strandat 385.329 kb on - strandat 385.329 kb on - strandat 385.373 kb on + strandat 385.373 kb on + strandat 385.373 kb on + strandat 385.373 kb on + strandat 385.422 kb on + strandat 385.448 kb on + strandat 385.449 kb on - strandat 385.450 kb on + strandat 385.451 kb on - strandat 385.455 kb on - strandat 385.550 kb on + strandat 385.550 kb on + strandat 385.574 kb on + strandat 385.607 kb on + strand, within EX28DRAFT_0408at 385.745 kb on - strand, within EX28DRAFT_0408at 385.776 kb on - strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 385.950 kb on + strand, within EX28DRAFT_0408at 386.027 kb on + strand, within EX28DRAFT_0408at 386.038 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.064 kb on + strand, within EX28DRAFT_0408at 386.066 kb on + strand, within EX28DRAFT_0408at 386.066 kb on + strand, within EX28DRAFT_0408at 386.289 kb on - strand, within EX28DRAFT_0408

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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383,406 + EX28DRAFT_0406 0.34 -0.6
383,461 - EX28DRAFT_0406 0.39 -0.6
383,619 + EX28DRAFT_0406 0.55 +1.9
383,620 - EX28DRAFT_0406 0.55 +0.4
383,772 + EX28DRAFT_0406 0.70 -1.0
383,772 + EX28DRAFT_0406 0.70 -0.6
383,789 - EX28DRAFT_0406 0.71 -0.5
383,858 + EX28DRAFT_0406 0.78 -1.1
383,859 - EX28DRAFT_0406 0.78 -4.1
384,129 + -0.7
384,150 - +0.2
384,184 + -0.3
384,185 - +1.3
384,207 + -0.2
384,282 + -2.3
384,373 + +0.2
384,382 + +0.0
384,382 + -0.6
384,383 - +0.1
384,473 + +0.2
384,475 + +0.0
384,475 + -1.1
384,475 + +0.8
384,476 - -0.4
384,476 - +0.7
384,476 - +0.6
384,479 + EX28DRAFT_0407 0.10 +0.4
384,479 + EX28DRAFT_0407 0.10 +0.2
384,749 + EX28DRAFT_0407 0.37 +0.3
384,750 - EX28DRAFT_0407 0.37 +1.2
384,750 - EX28DRAFT_0407 0.37 -0.5
384,762 - EX28DRAFT_0407 0.39 +0.7
384,764 + EX28DRAFT_0407 0.39 +0.2
384,764 + EX28DRAFT_0407 0.39 -0.0
384,765 - EX28DRAFT_0407 0.39 +0.6
384,796 + EX28DRAFT_0407 0.42 +0.4
384,797 - EX28DRAFT_0407 0.42 -0.1
384,926 + EX28DRAFT_0407 0.55 +0.9
384,926 + EX28DRAFT_0407 0.55 -0.6
384,926 + EX28DRAFT_0407 0.55 -0.9
384,926 + EX28DRAFT_0407 0.55 +0.1
384,926 + EX28DRAFT_0407 0.55 +0.5
384,927 - EX28DRAFT_0407 0.55 -0.3
384,927 - EX28DRAFT_0407 0.55 +1.8
384,978 + EX28DRAFT_0407 0.60 -0.1
384,979 - EX28DRAFT_0407 0.60 -0.2
384,979 - EX28DRAFT_0407 0.60 +0.5
385,101 + EX28DRAFT_0407 0.72 +1.6
385,150 - EX28DRAFT_0407 0.77 -2.0
385,328 + +1.0
385,329 - -2.1
385,329 - -0.1
385,373 + +0.4
385,373 + -0.5
385,373 + +0.7
385,373 + -0.1
385,422 + -0.1
385,448 + +0.7
385,449 - +0.8
385,450 + -0.3
385,451 - +0.7
385,455 - +1.1
385,550 + +0.5
385,550 + +0.3
385,574 + -0.5
385,607 + EX28DRAFT_0408 0.10 +0.0
385,745 - EX28DRAFT_0408 0.19 -0.4
385,776 - EX28DRAFT_0408 0.21 +0.6
385,950 + EX28DRAFT_0408 0.33 -1.8
385,950 + EX28DRAFT_0408 0.33 -0.3
385,950 + EX28DRAFT_0408 0.33 -0.7
385,950 + EX28DRAFT_0408 0.33 -0.2
386,027 + EX28DRAFT_0408 0.38 -0.2
386,038 + EX28DRAFT_0408 0.38 +1.0
386,064 + EX28DRAFT_0408 0.40 -1.2
386,064 + EX28DRAFT_0408 0.40 +0.2
386,064 + EX28DRAFT_0408 0.40 -1.0
386,064 + EX28DRAFT_0408 0.40 -0.8
386,066 + EX28DRAFT_0408 0.40 +2.2
386,066 + EX28DRAFT_0408 0.40 -1.1
386,289 - EX28DRAFT_0408 0.55 +2.4

Or see this region's nucleotide sequence