Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0341 and EX28DRAFT_0342 overlap by 4 nucleotides EX28DRAFT_0342 and EX28DRAFT_0343 overlap by 1 nucleotides EX28DRAFT_0343 and EX28DRAFT_0344 overlap by 4 nucleotides
EX28DRAFT_0341: EX28DRAFT_0341 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase, at 303,667 to 304,443
_0341
EX28DRAFT_0342: EX28DRAFT_0342 - 1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36), at 304,440 to 305,297
_0342
EX28DRAFT_0343: EX28DRAFT_0343 - O-succinylbenzoate synthase (EC 4.2.1.113), at 305,297 to 306,262
_0343
EX28DRAFT_0344: EX28DRAFT_0344 - O-succinylbenzoate-CoA ligase, at 306,259 to 307,620
_0344
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1 at 304.439 kb on + strand at 304.439 kb on + strand at 304.439 kb on + strand at 304.440 kb on - strand at 304.440 kb on - strand at 304.446 kb on + strand at 304.916 kb on - strand, within EX28DRAFT_0342 at 304.947 kb on + strand, within EX28DRAFT_0342 at 305.007 kb on + strand, within EX28DRAFT_0342 at 305.211 kb on + strand, within EX28DRAFT_0342 at 305.212 kb on - strand at 305.280 kb on + strand at 305.280 kb on + strand at 305.281 kb on - strand at 305.281 kb on - strand at 305.281 kb on - strand at 305.296 kb on - strand at 305.557 kb on + strand, within EX28DRAFT_0343 at 305.606 kb on - strand, within EX28DRAFT_0343 at 305.828 kb on + strand, within EX28DRAFT_0343 at 305.923 kb on - strand, within EX28DRAFT_0343 at 305.923 kb on - strand, within EX28DRAFT_0343 at 306.439 kb on - strand, within EX28DRAFT_0344 at 306.715 kb on - strand, within EX28DRAFT_0344 at 306.715 kb on - strand, within EX28DRAFT_0344 at 306.715 kb on - strand, within EX28DRAFT_0344 at 306.831 kb on - strand, within EX28DRAFT_0344 at 306.906 kb on + strand, within EX28DRAFT_0344 at 306.948 kb on + strand, within EX28DRAFT_0344 at 307.118 kb on + strand, within EX28DRAFT_0344 at 307.119 kb on - strand, within EX28DRAFT_0344 at 307.151 kb on + strand, within EX28DRAFT_0344 at 307.152 kb on - strand, within EX28DRAFT_0344 at 307.152 kb on - strand, within EX28DRAFT_0344 at 307.185 kb on + strand, within EX28DRAFT_0344 at 307.217 kb on + strand, within EX28DRAFT_0344 at 307.217 kb on + strand, within EX28DRAFT_0344 at 307.218 kb on - strand, within EX28DRAFT_0344
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 304,439 + +0.8 304,439 + -0.0 304,439 + +0.6 304,440 - +0.6 304,440 - +0.4 304,446 + +0.2 304,916 - EX28DRAFT_0342 0.55 +1.0 304,947 + EX28DRAFT_0342 0.59 -1.1 305,007 + EX28DRAFT_0342 0.66 +0.8 305,211 + EX28DRAFT_0342 0.90 +0.5 305,212 - -1.6 305,280 + -0.3 305,280 + -0.3 305,281 - -0.1 305,281 - -0.8 305,281 - -0.3 305,296 - -0.0 305,557 + EX28DRAFT_0343 0.27 -0.4 305,606 - EX28DRAFT_0343 0.32 -1.7 305,828 + EX28DRAFT_0343 0.55 +0.2 305,923 - EX28DRAFT_0343 0.65 -0.2 305,923 - EX28DRAFT_0343 0.65 +0.2 306,439 - EX28DRAFT_0344 0.13 +0.0 306,715 - EX28DRAFT_0344 0.33 +0.0 306,715 - EX28DRAFT_0344 0.33 -1.1 306,715 - EX28DRAFT_0344 0.33 -0.2 306,831 - EX28DRAFT_0344 0.42 +0.5 306,906 + EX28DRAFT_0344 0.48 +0.1 306,948 + EX28DRAFT_0344 0.51 -0.1 307,118 + EX28DRAFT_0344 0.63 +0.2 307,119 - EX28DRAFT_0344 0.63 -0.4 307,151 + EX28DRAFT_0344 0.65 +0.0 307,152 - EX28DRAFT_0344 0.66 -0.3 307,152 - EX28DRAFT_0344 0.66 +0.9 307,185 + EX28DRAFT_0344 0.68 -0.2 307,217 + EX28DRAFT_0344 0.70 +0.2 307,217 + EX28DRAFT_0344 0.70 +0.1 307,218 - EX28DRAFT_0344 0.70 -0.6
Or see this region's nucleotide sequence