Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0339 and EX28DRAFT_0340 are separated by 88 nucleotides EX28DRAFT_0340 and EX28DRAFT_0341 overlap by 4 nucleotides EX28DRAFT_0341 and EX28DRAFT_0342 overlap by 4 nucleotides
EX28DRAFT_0339: EX28DRAFT_0339 - isochorismate synthase (EC 5.4.4.2), at 300,616 to 301,911
_0339
EX28DRAFT_0340: EX28DRAFT_0340 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase, at 302,000 to 303,670
_0340
EX28DRAFT_0341: EX28DRAFT_0341 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase, at 303,667 to 304,443
_0341
EX28DRAFT_0342: EX28DRAFT_0342 - 1,4-Dihydroxy-2-naphthoyl-CoA synthase (EC 4.1.3.36), at 304,440 to 305,297
_0342
Position (kb) 301
302
303
304 Strain fitness (log2 ratio) -1
0
1
2 at 301.071 kb on + strand, within EX28DRAFT_0339 at 301.072 kb on - strand, within EX28DRAFT_0339 at 301.271 kb on + strand, within EX28DRAFT_0339 at 301.279 kb on + strand, within EX28DRAFT_0339 at 301.470 kb on + strand, within EX28DRAFT_0339 at 301.470 kb on + strand, within EX28DRAFT_0339 at 301.488 kb on + strand, within EX28DRAFT_0339 at 301.529 kb on + strand, within EX28DRAFT_0339 at 301.558 kb on - strand, within EX28DRAFT_0339 at 301.632 kb on - strand, within EX28DRAFT_0339 at 301.739 kb on + strand, within EX28DRAFT_0339 at 301.824 kb on + strand at 301.872 kb on + strand at 301.910 kb on - strand at 301.937 kb on + strand at 301.965 kb on + strand at 301.965 kb on + strand at 301.966 kb on - strand at 301.966 kb on - strand at 301.966 kb on - strand at 301.968 kb on - strand at 302.018 kb on - strand at 302.081 kb on - strand at 302.081 kb on - strand at 302.081 kb on - strand at 302.304 kb on + strand, within EX28DRAFT_0340 at 302.425 kb on + strand, within EX28DRAFT_0340 at 302.426 kb on - strand, within EX28DRAFT_0340 at 302.426 kb on - strand, within EX28DRAFT_0340 at 302.495 kb on - strand, within EX28DRAFT_0340 at 302.522 kb on + strand, within EX28DRAFT_0340 at 302.915 kb on + strand, within EX28DRAFT_0340 at 303.521 kb on + strand at 303.797 kb on - strand, within EX28DRAFT_0341 at 304.108 kb on + strand, within EX28DRAFT_0341 at 304.277 kb on - strand, within EX28DRAFT_0341 at 304.277 kb on - strand, within EX28DRAFT_0341 at 304.439 kb on + strand at 304.439 kb on + strand at 304.439 kb on + strand at 304.440 kb on - strand at 304.440 kb on - strand at 304.446 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 301,071 + EX28DRAFT_0339 0.35 +0.9 301,072 - EX28DRAFT_0339 0.35 -0.2 301,271 + EX28DRAFT_0339 0.51 -0.1 301,279 + EX28DRAFT_0339 0.51 -1.5 301,470 + EX28DRAFT_0339 0.66 +0.5 301,470 + EX28DRAFT_0339 0.66 -0.5 301,488 + EX28DRAFT_0339 0.67 +0.4 301,529 + EX28DRAFT_0339 0.70 +0.3 301,558 - EX28DRAFT_0339 0.73 +0.5 301,632 - EX28DRAFT_0339 0.78 +0.8 301,739 + EX28DRAFT_0339 0.87 -0.2 301,824 + -0.3 301,872 + +0.7 301,910 - -0.6 301,937 + -0.8 301,965 + -0.1 301,965 + -0.6 301,966 - +0.5 301,966 - +0.2 301,966 - -0.6 301,968 - +0.4 302,018 - +0.7 302,081 - +2.0 302,081 - +0.4 302,081 - +0.0 302,304 + EX28DRAFT_0340 0.18 +0.7 302,425 + EX28DRAFT_0340 0.25 +1.2 302,426 - EX28DRAFT_0340 0.25 +0.7 302,426 - EX28DRAFT_0340 0.25 -0.6 302,495 - EX28DRAFT_0340 0.30 +0.2 302,522 + EX28DRAFT_0340 0.31 +0.6 302,915 + EX28DRAFT_0340 0.55 -0.3 303,521 + -1.0 303,797 - EX28DRAFT_0341 0.17 +0.4 304,108 + EX28DRAFT_0341 0.57 -0.3 304,277 - EX28DRAFT_0341 0.79 -0.0 304,277 - EX28DRAFT_0341 0.79 -0.6 304,439 + +0.8 304,439 + -0.0 304,439 + +0.6 304,440 - +0.6 304,440 - +0.4 304,446 + +0.2
Or see this region's nucleotide sequence