Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0338

Experiment: MS_media with m-arsenite 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_0336 and EX28DRAFT_0337 are separated by 71 nucleotidesEX28DRAFT_0337 and EX28DRAFT_0338 are separated by 53 nucleotidesEX28DRAFT_0338 and EX28DRAFT_0339 are separated by 86 nucleotides EX28DRAFT_0336: EX28DRAFT_0336 - ribonuclease Z, at 298,720 to 299,637 _0336 EX28DRAFT_0337: EX28DRAFT_0337 - Predicted acyltransferase, at 299,709 to 300,170 _0337 EX28DRAFT_0338: EX28DRAFT_0338 - Uncharacterized conserved protein, at 300,224 to 300,529 _0338 EX28DRAFT_0339: EX28DRAFT_0339 - isochorismate synthase (EC 5.4.4.2), at 300,616 to 301,911 _0339 Position (kb) 300 301Strain fitness (log2 ratio) -2 -1 0 1 2at 299.323 kb on + strand, within EX28DRAFT_0336at 299.329 kb on - strand, within EX28DRAFT_0336at 299.560 kb on - strandat 299.617 kb on - strandat 299.673 kb on + strandat 299.674 kb on - strandat 299.676 kb on + strandat 299.678 kb on + strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.729 kb on - strandat 299.814 kb on + strand, within EX28DRAFT_0337at 299.859 kb on - strand, within EX28DRAFT_0337at 299.893 kb on - strand, within EX28DRAFT_0337at 300.045 kb on + strand, within EX28DRAFT_0337at 300.046 kb on - strand, within EX28DRAFT_0337at 300.078 kb on + strand, within EX28DRAFT_0337at 300.079 kb on - strand, within EX28DRAFT_0337at 300.143 kb on + strandat 300.188 kb on + strandat 300.189 kb on - strandat 300.206 kb on - strandat 300.208 kb on + strandat 300.208 kb on + strandat 300.209 kb on - strandat 300.209 kb on - strandat 300.224 kb on - strandat 300.297 kb on + strand, within EX28DRAFT_0338at 300.297 kb on + strand, within EX28DRAFT_0338at 300.329 kb on + strand, within EX28DRAFT_0338at 300.329 kb on + strand, within EX28DRAFT_0338at 300.330 kb on - strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.331 kb on + strand, within EX28DRAFT_0338at 300.332 kb on - strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.400 kb on + strand, within EX28DRAFT_0338at 300.401 kb on - strand, within EX28DRAFT_0338at 300.404 kb on + strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.405 kb on - strand, within EX28DRAFT_0338at 300.407 kb on + strand, within EX28DRAFT_0338at 300.431 kb on + strand, within EX28DRAFT_0338at 300.431 kb on + strand, within EX28DRAFT_0338at 300.446 kb on + strand, within EX28DRAFT_0338at 300.446 kb on + strand, within EX28DRAFT_0338at 300.447 kb on - strand, within EX28DRAFT_0338at 300.548 kb on - strandat 300.548 kb on - strandat 300.549 kb on + strandat 300.549 kb on + strandat 300.550 kb on - strandat 300.550 kb on - strandat 300.563 kb on + strandat 300.563 kb on + strandat 300.564 kb on - strandat 300.568 kb on - strandat 300.568 kb on - strandat 300.586 kb on - strandat 300.589 kb on - strandat 300.589 kb on - strandat 300.689 kb on + strandat 300.775 kb on + strand, within EX28DRAFT_0339at 301.071 kb on + strand, within EX28DRAFT_0339at 301.072 kb on - strand, within EX28DRAFT_0339at 301.271 kb on + strand, within EX28DRAFT_0339at 301.279 kb on + strand, within EX28DRAFT_0339at 301.470 kb on + strand, within EX28DRAFT_0339at 301.470 kb on + strand, within EX28DRAFT_0339at 301.488 kb on + strand, within EX28DRAFT_0339at 301.529 kb on + strand, within EX28DRAFT_0339

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
remove
299,323 + EX28DRAFT_0336 0.66 -0.0
299,329 - EX28DRAFT_0336 0.66 -0.8
299,560 - -0.1
299,617 - -0.9
299,673 + -0.3
299,674 - +1.0
299,676 + +0.3
299,678 + -0.2
299,729 - +0.3
299,729 - -2.3
299,729 - +0.3
299,729 - +0.1
299,814 + EX28DRAFT_0337 0.23 -0.5
299,859 - EX28DRAFT_0337 0.32 -0.4
299,893 - EX28DRAFT_0337 0.40 +0.4
300,045 + EX28DRAFT_0337 0.73 +0.2
300,046 - EX28DRAFT_0337 0.73 -0.6
300,078 + EX28DRAFT_0337 0.80 +0.6
300,079 - EX28DRAFT_0337 0.80 +0.1
300,143 + -0.9
300,188 + +0.3
300,189 - +0.5
300,206 - -0.2
300,208 + +0.2
300,208 + -0.7
300,209 - +0.2
300,209 - -0.5
300,224 - +0.5
300,297 + EX28DRAFT_0338 0.24 +0.7
300,297 + EX28DRAFT_0338 0.24 -0.5
300,329 + EX28DRAFT_0338 0.34 +0.6
300,329 + EX28DRAFT_0338 0.34 +0.4
300,330 - EX28DRAFT_0338 0.35 +0.7
300,331 + EX28DRAFT_0338 0.35 +0.6
300,331 + EX28DRAFT_0338 0.35 -1.5
300,331 + EX28DRAFT_0338 0.35 +0.3
300,332 - EX28DRAFT_0338 0.35 +0.1
300,400 + EX28DRAFT_0338 0.58 -0.2
300,400 + EX28DRAFT_0338 0.58 +0.2
300,400 + EX28DRAFT_0338 0.58 -0.2
300,401 - EX28DRAFT_0338 0.58 +0.1
300,404 + EX28DRAFT_0338 0.59 -0.2
300,405 - EX28DRAFT_0338 0.59 +0.6
300,405 - EX28DRAFT_0338 0.59 -0.1
300,405 - EX28DRAFT_0338 0.59 +0.3
300,407 + EX28DRAFT_0338 0.60 +0.8
300,431 + EX28DRAFT_0338 0.68 +0.2
300,431 + EX28DRAFT_0338 0.68 +0.7
300,446 + EX28DRAFT_0338 0.73 -0.2
300,446 + EX28DRAFT_0338 0.73 +0.3
300,447 - EX28DRAFT_0338 0.73 +1.4
300,548 - +0.1
300,548 - +0.3
300,549 + +1.2
300,549 + +1.9
300,550 - -0.6
300,550 - -1.1
300,563 + -0.3
300,563 + -1.3
300,564 - -0.5
300,568 - -0.1
300,568 - +0.6
300,586 - +0.6
300,589 - -2.4
300,589 - +0.2
300,689 + -0.7
300,775 + EX28DRAFT_0339 0.12 +0.4
301,071 + EX28DRAFT_0339 0.35 +0.9
301,072 - EX28DRAFT_0339 0.35 -0.2
301,271 + EX28DRAFT_0339 0.51 -0.1
301,279 + EX28DRAFT_0339 0.51 -1.5
301,470 + EX28DRAFT_0339 0.66 +0.5
301,470 + EX28DRAFT_0339 0.66 -0.5
301,488 + EX28DRAFT_0339 0.67 +0.4
301,529 + EX28DRAFT_0339 0.70 +0.3

Or see this region's nucleotide sequence