Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0328 and EX28DRAFT_0329 are separated by 13 nucleotides EX28DRAFT_0329 and EX28DRAFT_0330 are separated by 10 nucleotides EX28DRAFT_0330 and EX28DRAFT_0331 overlap by 4 nucleotides EX28DRAFT_0331 and EX28DRAFT_0332 overlap by 4 nucleotides
EX28DRAFT_0328: EX28DRAFT_0328 - NADH:ubiquinone oxidoreductase subunit 1 (chain H), at 290,253 to 291,230
_0328
EX28DRAFT_0329: EX28DRAFT_0329 - NADH-quinone oxidoreductase, chain I, at 291,244 to 291,786
_0329
EX28DRAFT_0330: EX28DRAFT_0330 - NADH:ubiquinone oxidoreductase subunit 6 (chain J), at 291,797 to 292,351
_0330
EX28DRAFT_0331: EX28DRAFT_0331 - NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K), at 292,348 to 292,650
_0331
EX28DRAFT_0332: EX28DRAFT_0332 - proton-translocating NADH-quinone oxidoreductase, chain L, at 292,647 to 294,488
_0332
Position (kb) 291
292
293 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 290.843 kb on + strand, within EX28DRAFT_0328 at 291.142 kb on + strand at 291.237 kb on - strand at 291.238 kb on + strand at 291.251 kb on + strand at 291.285 kb on - strand at 291.358 kb on + strand, within EX28DRAFT_0329 at 291.358 kb on + strand, within EX28DRAFT_0329 at 291.359 kb on - strand, within EX28DRAFT_0329 at 291.465 kb on + strand, within EX28DRAFT_0329 at 291.465 kb on + strand, within EX28DRAFT_0329 at 291.616 kb on + strand, within EX28DRAFT_0329 at 291.616 kb on + strand, within EX28DRAFT_0329 at 291.617 kb on - strand, within EX28DRAFT_0329 at 291.638 kb on - strand, within EX28DRAFT_0329 at 291.685 kb on + strand, within EX28DRAFT_0329 at 291.754 kb on - strand at 291.812 kb on + strand at 291.812 kb on + strand at 291.888 kb on - strand, within EX28DRAFT_0330 at 291.891 kb on + strand, within EX28DRAFT_0330 at 292.186 kb on + strand, within EX28DRAFT_0330 at 292.531 kb on + strand, within EX28DRAFT_0331 at 292.532 kb on - strand, within EX28DRAFT_0331 at 292.532 kb on - strand, within EX28DRAFT_0331 at 292.962 kb on + strand, within EX28DRAFT_0332 at 292.963 kb on - strand, within EX28DRAFT_0332 at 292.965 kb on - strand, within EX28DRAFT_0332 at 293.064 kb on + strand, within EX28DRAFT_0332 at 293.064 kb on + strand, within EX28DRAFT_0332 at 293.115 kb on + strand, within EX28DRAFT_0332 at 293.115 kb on + strand, within EX28DRAFT_0332 at 293.118 kb on + strand, within EX28DRAFT_0332 at 293.300 kb on + strand, within EX28DRAFT_0332
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 290,843 + EX28DRAFT_0328 0.60 -1.8 291,142 + -0.8 291,237 - -1.3 291,238 + -3.0 291,251 + -1.4 291,285 - -0.3 291,358 + EX28DRAFT_0329 0.21 -1.8 291,358 + EX28DRAFT_0329 0.21 -3.5 291,359 - EX28DRAFT_0329 0.21 -1.7 291,465 + EX28DRAFT_0329 0.41 -0.8 291,465 + EX28DRAFT_0329 0.41 -0.1 291,616 + EX28DRAFT_0329 0.69 -0.8 291,616 + EX28DRAFT_0329 0.69 -2.0 291,617 - EX28DRAFT_0329 0.69 -0.6 291,638 - EX28DRAFT_0329 0.73 -3.0 291,685 + EX28DRAFT_0329 0.81 -1.6 291,754 - -0.6 291,812 + -1.4 291,812 + -0.8 291,888 - EX28DRAFT_0330 0.16 -3.5 291,891 + EX28DRAFT_0330 0.17 -0.9 292,186 + EX28DRAFT_0330 0.70 -2.2 292,531 + EX28DRAFT_0331 0.60 -1.3 292,532 - EX28DRAFT_0331 0.61 -3.9 292,532 - EX28DRAFT_0331 0.61 -0.7 292,962 + EX28DRAFT_0332 0.17 -1.9 292,963 - EX28DRAFT_0332 0.17 -3.0 292,965 - EX28DRAFT_0332 0.17 -3.0 293,064 + EX28DRAFT_0332 0.23 -1.1 293,064 + EX28DRAFT_0332 0.23 -1.3 293,115 + EX28DRAFT_0332 0.25 -1.3 293,115 + EX28DRAFT_0332 0.25 -1.8 293,118 + EX28DRAFT_0332 0.26 -1.4 293,300 + EX28DRAFT_0332 0.35 -1.8
Or see this region's nucleotide sequence