Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0196

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0195 and EX28DRAFT_0196 are separated by 96 nucleotidesEX28DRAFT_0196 and EX28DRAFT_0197 are separated by 19 nucleotides EX28DRAFT_0195: EX28DRAFT_0195 - Protein of unknown function (DUF1176), at 148,170 to 149,213 _0195 EX28DRAFT_0196: EX28DRAFT_0196 - transketolase, bacterial and yeast, at 149,310 to 151,298 _0196 EX28DRAFT_0197: EX28DRAFT_0197 - transaldolase, at 151,318 to 152,268 _0197 Position (kb) 149 150 151 152Strain fitness (log2 ratio) -2 -1 0 1 2at 148.500 kb on - strand, within EX28DRAFT_0195at 148.500 kb on - strand, within EX28DRAFT_0195at 148.577 kb on + strand, within EX28DRAFT_0195at 148.786 kb on - strand, within EX28DRAFT_0195at 148.906 kb on - strand, within EX28DRAFT_0195at 148.908 kb on - strand, within EX28DRAFT_0195at 149.217 kb on + strandat 149.437 kb on + strandat 149.437 kb on + strandat 149.437 kb on + strandat 149.437 kb on + strandat 149.438 kb on - strandat 149.438 kb on - strandat 149.438 kb on - strandat 149.680 kb on + strand, within EX28DRAFT_0196at 149.680 kb on + strand, within EX28DRAFT_0196at 149.927 kb on - strand, within EX28DRAFT_0196at 149.927 kb on - strand, within EX28DRAFT_0196at 150.013 kb on + strand, within EX28DRAFT_0196at 150.063 kb on - strand, within EX28DRAFT_0196at 150.091 kb on + strand, within EX28DRAFT_0196at 150.091 kb on + strand, within EX28DRAFT_0196at 150.091 kb on + strand, within EX28DRAFT_0196at 150.091 kb on + strand, within EX28DRAFT_0196at 150.430 kb on + strand, within EX28DRAFT_0196at 150.431 kb on - strand, within EX28DRAFT_0196at 150.431 kb on - strand, within EX28DRAFT_0196at 150.431 kb on - strand, within EX28DRAFT_0196at 150.578 kb on + strand, within EX28DRAFT_0196at 150.679 kb on + strand, within EX28DRAFT_0196at 150.846 kb on - strand, within EX28DRAFT_0196at 150.853 kb on + strand, within EX28DRAFT_0196at 150.853 kb on + strand, within EX28DRAFT_0196at 150.853 kb on + strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.854 kb on - strand, within EX28DRAFT_0196at 150.857 kb on + strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 150.858 kb on - strand, within EX28DRAFT_0196at 151.088 kb on - strand, within EX28DRAFT_0196at 151.281 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.298 kb on + strandat 151.299 kb on - strandat 151.299 kb on - strandat 151.299 kb on - strandat 151.299 kb on - strandat 151.516 kb on + strand, within EX28DRAFT_0197at 151.517 kb on - strand, within EX28DRAFT_0197at 151.644 kb on - strand, within EX28DRAFT_0197at 151.644 kb on - strand, within EX28DRAFT_0197at 151.648 kb on - strand, within EX28DRAFT_0197at 151.688 kb on + strand, within EX28DRAFT_0197at 151.688 kb on + strand, within EX28DRAFT_0197at 151.689 kb on - strand, within EX28DRAFT_0197at 151.689 kb on - strand, within EX28DRAFT_0197at 151.724 kb on + strand, within EX28DRAFT_0197at 151.724 kb on + strand, within EX28DRAFT_0197at 151.725 kb on - strand, within EX28DRAFT_0197at 151.725 kb on - strand, within EX28DRAFT_0197at 151.897 kb on - strand, within EX28DRAFT_0197at 151.897 kb on - strand, within EX28DRAFT_0197at 151.897 kb on - strand, within EX28DRAFT_0197at 151.945 kb on - strand, within EX28DRAFT_0197at 152.035 kb on - strand, within EX28DRAFT_0197at 152.099 kb on + strand, within EX28DRAFT_0197at 152.158 kb on + strand, within EX28DRAFT_0197at 152.268 kb on + strandat 152.269 kb on - strandat 152.276 kb on + strandat 152.277 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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148,500 - EX28DRAFT_0195 0.32 -1.0
148,500 - EX28DRAFT_0195 0.32 +0.5
148,577 + EX28DRAFT_0195 0.39 -0.4
148,786 - EX28DRAFT_0195 0.59 +0.6
148,906 - EX28DRAFT_0195 0.70 +0.7
148,908 - EX28DRAFT_0195 0.71 +0.1
149,217 + -0.3
149,437 + +1.1
149,437 + +0.6
149,437 + -0.1
149,437 + +0.2
149,438 - -0.8
149,438 - -0.3
149,438 - +0.3
149,680 + EX28DRAFT_0196 0.19 -0.4
149,680 + EX28DRAFT_0196 0.19 +1.3
149,927 - EX28DRAFT_0196 0.31 -0.0
149,927 - EX28DRAFT_0196 0.31 +1.3
150,013 + EX28DRAFT_0196 0.35 -0.1
150,063 - EX28DRAFT_0196 0.38 -0.1
150,091 + EX28DRAFT_0196 0.39 -0.9
150,091 + EX28DRAFT_0196 0.39 +0.1
150,091 + EX28DRAFT_0196 0.39 +0.4
150,091 + EX28DRAFT_0196 0.39 +0.7
150,430 + EX28DRAFT_0196 0.56 +0.4
150,431 - EX28DRAFT_0196 0.56 +0.8
150,431 - EX28DRAFT_0196 0.56 -0.5
150,431 - EX28DRAFT_0196 0.56 +0.7
150,578 + EX28DRAFT_0196 0.64 +0.3
150,679 + EX28DRAFT_0196 0.69 +0.2
150,846 - EX28DRAFT_0196 0.77 -1.0
150,853 + EX28DRAFT_0196 0.78 +0.4
150,853 + EX28DRAFT_0196 0.78 -0.1
150,853 + EX28DRAFT_0196 0.78 +0.2
150,854 - EX28DRAFT_0196 0.78 +0.0
150,854 - EX28DRAFT_0196 0.78 +0.9
150,854 - EX28DRAFT_0196 0.78 -0.1
150,854 - EX28DRAFT_0196 0.78 -0.5
150,857 + EX28DRAFT_0196 0.78 +0.4
150,858 - EX28DRAFT_0196 0.78 +0.5
150,858 - EX28DRAFT_0196 0.78 -0.3
150,858 - EX28DRAFT_0196 0.78 +1.0
150,858 - EX28DRAFT_0196 0.78 -0.3
151,088 - EX28DRAFT_0196 0.89 -1.6
151,281 + +0.9
151,298 + -0.3
151,298 + -1.9
151,298 + +0.3
151,298 + +0.5
151,298 + -0.0
151,299 - -0.3
151,299 - +0.1
151,299 - -0.2
151,299 - -0.5
151,516 + EX28DRAFT_0197 0.21 -0.5
151,517 - EX28DRAFT_0197 0.21 -1.8
151,644 - EX28DRAFT_0197 0.34 +0.3
151,644 - EX28DRAFT_0197 0.34 -0.5
151,648 - EX28DRAFT_0197 0.35 -0.7
151,688 + EX28DRAFT_0197 0.39 -1.3
151,688 + EX28DRAFT_0197 0.39 -0.2
151,689 - EX28DRAFT_0197 0.39 +0.9
151,689 - EX28DRAFT_0197 0.39 +0.0
151,724 + EX28DRAFT_0197 0.43 -0.5
151,724 + EX28DRAFT_0197 0.43 -0.2
151,725 - EX28DRAFT_0197 0.43 -0.3
151,725 - EX28DRAFT_0197 0.43 +0.3
151,897 - EX28DRAFT_0197 0.61 +0.6
151,897 - EX28DRAFT_0197 0.61 -0.4
151,897 - EX28DRAFT_0197 0.61 +0.0
151,945 - EX28DRAFT_0197 0.66 -0.2
152,035 - EX28DRAFT_0197 0.75 -0.7
152,099 + EX28DRAFT_0197 0.82 +0.6
152,158 + EX28DRAFT_0197 0.88 +1.8
152,268 + -2.1
152,269 - -0.6
152,276 + +0.2
152,277 - -0.8

Or see this region's nucleotide sequence