Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0167

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0166 and EX28DRAFT_0167 are separated by 207 nucleotidesEX28DRAFT_0167 and EX28DRAFT_0168 overlap by 4 nucleotides EX28DRAFT_0166: EX28DRAFT_0166 - polyphosphate kinase 1, at 113,789 to 115,849 _0166 EX28DRAFT_0167: EX28DRAFT_0167 - phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent, at 116,057 to 116,698 _0167 EX28DRAFT_0168: EX28DRAFT_0168 - phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1), at 116,695 to 117,732 _0168 Position (kb) 116 117Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 115.153 kb on - strand, within EX28DRAFT_0166at 115.249 kb on + strand, within EX28DRAFT_0166at 115.389 kb on + strand, within EX28DRAFT_0166at 115.389 kb on + strand, within EX28DRAFT_0166at 115.390 kb on - strand, within EX28DRAFT_0166at 115.444 kb on + strand, within EX28DRAFT_0166at 115.462 kb on - strand, within EX28DRAFT_0166at 115.462 kb on - strand, within EX28DRAFT_0166at 115.567 kb on - strand, within EX28DRAFT_0166at 115.644 kb on - strandat 115.701 kb on + strandat 115.702 kb on - strandat 115.726 kb on - strandat 115.787 kb on + strandat 115.788 kb on - strandat 115.798 kb on + strandat 115.814 kb on + strandat 115.814 kb on + strandat 115.828 kb on + strandat 115.830 kb on + strandat 115.831 kb on - strandat 115.885 kb on + strandat 115.886 kb on - strandat 115.886 kb on - strandat 115.903 kb on - strandat 115.925 kb on + strandat 115.925 kb on + strandat 115.926 kb on - strandat 115.926 kb on - strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.015 kb on + strandat 116.016 kb on - strandat 116.051 kb on - strandat 116.051 kb on - strandat 116.058 kb on + strandat 116.433 kb on + strand, within EX28DRAFT_0167

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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115,153 - EX28DRAFT_0166 0.66 -1.6
115,249 + EX28DRAFT_0166 0.71 -1.7
115,389 + EX28DRAFT_0166 0.78 -1.1
115,389 + EX28DRAFT_0166 0.78 -0.3
115,390 - EX28DRAFT_0166 0.78 -2.9
115,444 + EX28DRAFT_0166 0.80 -1.0
115,462 - EX28DRAFT_0166 0.81 -2.6
115,462 - EX28DRAFT_0166 0.81 +0.0
115,567 - EX28DRAFT_0166 0.86 -0.8
115,644 - -1.5
115,701 + -5.7
115,702 - -3.0
115,726 - -3.8
115,787 + -2.3
115,788 - -4.0
115,798 + -4.2
115,814 + -1.0
115,814 + -3.7
115,828 + -1.4
115,830 + -2.7
115,831 - -1.7
115,885 + -0.8
115,886 - -1.6
115,886 - +0.2
115,903 - +0.5
115,925 + -2.4
115,925 + +0.1
115,926 - -0.8
115,926 - +0.1
116,015 + +0.7
116,015 + -0.3
116,015 + +0.6
116,015 + -1.5
116,015 + +0.8
116,016 - +0.6
116,051 - +0.1
116,051 - +0.3
116,058 + -3.0
116,433 + EX28DRAFT_0167 0.59 -3.7

Or see this region's nucleotide sequence