Experiment: MS_media with m-arsenite 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0114 and EX28DRAFT_0115 are separated by 1 nucleotides EX28DRAFT_0115 and EX28DRAFT_0116 are separated by 1 nucleotides EX28DRAFT_0116 and EX28DRAFT_0117 are separated by 60 nucleotides
EX28DRAFT_0114: EX28DRAFT_0114 - Fe-S protein assembly chaperone HscA, at 52,045 to 53,895
_0114
EX28DRAFT_0115: EX28DRAFT_0115 - ferredoxin, 2Fe-2S type, ISC system, at 53,897 to 54,232
_0115
EX28DRAFT_0116: EX28DRAFT_0116 - FeS assembly protein IscX, at 54,234 to 54,434
_0116
EX28DRAFT_0117: EX28DRAFT_0117 - Leucyl aminopeptidase, at 54,495 to 55,781
_0117
Position (kb) 54
55 Strain fitness (log2 ratio) -2
-1
0
1 at 54.204 kb on - strand at 54.233 kb on + strand at 54.314 kb on - strand, within EX28DRAFT_0116 at 54.419 kb on - strand at 54.442 kb on - strand at 54.472 kb on - strand at 54.479 kb on - strand at 54.481 kb on + strand at 54.487 kb on + strand at 54.492 kb on - strand at 54.564 kb on + strand at 54.662 kb on + strand, within EX28DRAFT_0117 at 54.964 kb on - strand, within EX28DRAFT_0117 at 54.964 kb on - strand, within EX28DRAFT_0117 at 55.058 kb on - strand, within EX28DRAFT_0117 at 55.224 kb on + strand, within EX28DRAFT_0117 at 55.224 kb on + strand, within EX28DRAFT_0117 at 55.225 kb on - strand, within EX28DRAFT_0117 at 55.225 kb on - strand, within EX28DRAFT_0117
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM remove 54,204 - -1.4 54,233 + -1.4 54,314 - EX28DRAFT_0116 0.40 -1.6 54,419 - -0.3 54,442 - -1.6 54,472 - +0.5 54,479 - -1.0 54,481 + -1.9 54,487 + -1.2 54,492 - -0.1 54,564 + +1.2 54,662 + EX28DRAFT_0117 0.13 +0.1 54,964 - EX28DRAFT_0117 0.36 -1.2 54,964 - EX28DRAFT_0117 0.36 -0.2 55,058 - EX28DRAFT_0117 0.44 -0.5 55,224 + EX28DRAFT_0117 0.57 -0.5 55,224 + EX28DRAFT_0117 0.57 -1.3 55,225 - EX28DRAFT_0117 0.57 -0.7 55,225 - EX28DRAFT_0117 0.57 -0.4
Or see this region's nucleotide sequence