Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0108

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0107 and EX28DRAFT_0108 are separated by 216 nucleotidesEX28DRAFT_0108 and EX28DRAFT_0109 are separated by 6 nucleotidesEX28DRAFT_0109 and EX28DRAFT_0110 are separated by 1 nucleotides EX28DRAFT_0107: EX28DRAFT_0107 - RNA methyltransferase, TrmH family, group 1, at 47,921 to 48,646 _0107 EX28DRAFT_0108: EX28DRAFT_0108 - transcriptional regulator, BadM/Rrf2 family, at 48,863 to 49,354 _0108 EX28DRAFT_0109: EX28DRAFT_0109 - RNA, at 49,361 to 49,470 _0109 EX28DRAFT_0110: EX28DRAFT_0110 - cysteine desulfurase IscS, at 49,472 to 50,686 _0110 Position (kb) 48 49 50Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 48.255 kb on + strand, within EX28DRAFT_0107at 48.256 kb on - strand, within EX28DRAFT_0107at 48.309 kb on - strand, within EX28DRAFT_0107at 48.392 kb on - strand, within EX28DRAFT_0107at 48.446 kb on + strand, within EX28DRAFT_0107at 48.477 kb on - strand, within EX28DRAFT_0107at 48.594 kb on + strandat 48.637 kb on + strandat 48.644 kb on + strandat 48.644 kb on + strandat 48.645 kb on - strandat 48.877 kb on + strandat 48.877 kb on + strandat 48.952 kb on + strand, within EX28DRAFT_0108

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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48,255 + EX28DRAFT_0107 0.46 +1.7
48,256 - EX28DRAFT_0107 0.46 +0.1
48,309 - EX28DRAFT_0107 0.53 -0.0
48,392 - EX28DRAFT_0107 0.65 -0.8
48,446 + EX28DRAFT_0107 0.72 -0.4
48,477 - EX28DRAFT_0107 0.77 -0.2
48,594 + +1.2
48,637 + +2.0
48,644 + +0.8
48,644 + +0.7
48,645 - -0.5
48,877 + -4.9
48,877 + -5.7
48,952 + EX28DRAFT_0108 0.18 -4.6

Or see this region's nucleotide sequence