Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0090

Experiment: MS_media with m-arsenite 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0088 and EX28DRAFT_0089 are separated by 24 nucleotidesEX28DRAFT_0089 and EX28DRAFT_0090 overlap by 113 nucleotidesEX28DRAFT_0090 and EX28DRAFT_0091 are separated by 135 nucleotidesEX28DRAFT_0091 and EX28DRAFT_0092 are separated by 30 nucleotides EX28DRAFT_0088: EX28DRAFT_0088 - haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB, at 27,487 to 28,122 _0088 EX28DRAFT_0089: EX28DRAFT_0089 - Cytosine/adenosine deaminases, at 28,147 to 28,686 _0089 EX28DRAFT_0090: EX28DRAFT_0090 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 28,574 to 30,124 _0090 EX28DRAFT_0091: EX28DRAFT_0091 - hypothetical protein, at 30,260 to 30,361 _0091 EX28DRAFT_0092: EX28DRAFT_0092 - phosphoribosylformylglycinamidine synthase, single chain form, at 30,392 to 34,279 _0092 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1at 27.621 kb on - strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.696 kb on + strand, within EX28DRAFT_0088at 27.697 kb on - strand, within EX28DRAFT_0088at 27.805 kb on + strand, within EX28DRAFT_0088at 28.120 kb on + strandat 28.131 kb on - strandat 28.131 kb on - strandat 28.143 kb on + strandat 28.144 kb on - strandat 28.144 kb on - strandat 28.146 kb on - strandat 28.785 kb on + strand, within EX28DRAFT_0090at 28.806 kb on + strand, within EX28DRAFT_0090at 28.807 kb on - strand, within EX28DRAFT_0090at 28.813 kb on - strand, within EX28DRAFT_0090at 28.839 kb on + strand, within EX28DRAFT_0090at 28.853 kb on - strand, within EX28DRAFT_0090at 28.853 kb on - strand, within EX28DRAFT_0090at 28.854 kb on + strand, within EX28DRAFT_0090at 28.855 kb on - strand, within EX28DRAFT_0090at 28.855 kb on - strand, within EX28DRAFT_0090at 28.915 kb on + strand, within EX28DRAFT_0090at 28.955 kb on - strand, within EX28DRAFT_0090at 28.974 kb on + strand, within EX28DRAFT_0090at 29.038 kb on + strand, within EX28DRAFT_0090at 29.039 kb on - strand, within EX28DRAFT_0090at 29.050 kb on - strand, within EX28DRAFT_0090at 29.331 kb on + strand, within EX28DRAFT_0090at 29.356 kb on + strand, within EX28DRAFT_0090at 29.529 kb on + strand, within EX28DRAFT_0090at 29.530 kb on - strand, within EX28DRAFT_0090at 29.683 kb on + strand, within EX28DRAFT_0090at 29.749 kb on - strand, within EX28DRAFT_0090at 29.751 kb on + strand, within EX28DRAFT_0090at 29.752 kb on - strand, within EX28DRAFT_0090at 29.769 kb on + strand, within EX28DRAFT_0090at 29.791 kb on + strand, within EX28DRAFT_0090at 29.793 kb on + strand, within EX28DRAFT_0090at 29.793 kb on + strand, within EX28DRAFT_0090at 29.794 kb on - strand, within EX28DRAFT_0090at 29.794 kb on - strand, within EX28DRAFT_0090at 29.858 kb on - strand, within EX28DRAFT_0090at 30.084 kb on - strandat 30.174 kb on + strandat 30.239 kb on + strandat 30.258 kb on + strandat 30.259 kb on - strandat 30.325 kb on + strand, within EX28DRAFT_0091at 30.500 kb on + strandat 31.011 kb on - strand, within EX28DRAFT_0092

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with m-arsenite 1 mM
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27,621 - EX28DRAFT_0088 0.21 -1.2
27,696 + EX28DRAFT_0088 0.33 -0.2
27,696 + EX28DRAFT_0088 0.33 +0.2
27,696 + EX28DRAFT_0088 0.33 -0.3
27,696 + EX28DRAFT_0088 0.33 -0.1
27,697 - EX28DRAFT_0088 0.33 +0.5
27,805 + EX28DRAFT_0088 0.50 +0.6
28,120 + +0.6
28,131 - +0.1
28,131 - +0.3
28,143 + -1.0
28,144 - -0.2
28,144 - -1.0
28,146 - +0.3
28,785 + EX28DRAFT_0090 0.14 -0.1
28,806 + EX28DRAFT_0090 0.15 +0.5
28,807 - EX28DRAFT_0090 0.15 -0.6
28,813 - EX28DRAFT_0090 0.15 +0.7
28,839 + EX28DRAFT_0090 0.17 -0.6
28,853 - EX28DRAFT_0090 0.18 -0.4
28,853 - EX28DRAFT_0090 0.18 -0.4
28,854 + EX28DRAFT_0090 0.18 +0.2
28,855 - EX28DRAFT_0090 0.18 +0.4
28,855 - EX28DRAFT_0090 0.18 +0.9
28,915 + EX28DRAFT_0090 0.22 +0.0
28,955 - EX28DRAFT_0090 0.25 +0.1
28,974 + EX28DRAFT_0090 0.26 +0.0
29,038 + EX28DRAFT_0090 0.30 +1.0
29,039 - EX28DRAFT_0090 0.30 +0.7
29,050 - EX28DRAFT_0090 0.31 -0.1
29,331 + EX28DRAFT_0090 0.49 -0.4
29,356 + EX28DRAFT_0090 0.50 +0.2
29,529 + EX28DRAFT_0090 0.62 -0.4
29,530 - EX28DRAFT_0090 0.62 +0.1
29,683 + EX28DRAFT_0090 0.72 -0.2
29,749 - EX28DRAFT_0090 0.76 +0.3
29,751 + EX28DRAFT_0090 0.76 -0.0
29,752 - EX28DRAFT_0090 0.76 -0.9
29,769 + EX28DRAFT_0090 0.77 +0.1
29,791 + EX28DRAFT_0090 0.78 -0.2
29,793 + EX28DRAFT_0090 0.79 -1.1
29,793 + EX28DRAFT_0090 0.79 -0.7
29,794 - EX28DRAFT_0090 0.79 -0.5
29,794 - EX28DRAFT_0090 0.79 +1.0
29,858 - EX28DRAFT_0090 0.83 +0.8
30,084 - +0.3
30,174 + +0.5
30,239 + +0.0
30,258 + -1.3
30,259 - -3.4
30,325 + EX28DRAFT_0091 0.64 -3.5
30,500 + +0.2
31,011 - EX28DRAFT_0092 0.16 +1.0

Or see this region's nucleotide sequence