Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS22425 and ABIE41_RS22430 are separated by 19 nucleotides ABIE41_RS22430 and ABIE41_RS22435 are separated by 31 nucleotides ABIE41_RS22435 and ABIE41_RS22440 are separated by 15 nucleotides
ABIE41_RS22425: ABIE41_RS22425 - DUF2336 domain-containing protein, at 4,616,765 to 4,617,898
_RS22425
ABIE41_RS22430: ABIE41_RS22430 - DUF1491 family protein, at 4,617,918 to 4,618,253
_RS22430
ABIE41_RS22435: ABIE41_RS22435 - hypothetical protein, at 4,618,285 to 4,618,899
_RS22435
ABIE41_RS22440: ABIE41_RS22440 - PAS domain-containing sensor histidine kinase, at 4,618,915 to 4,620,684
_RS22440
Position (kb) 4617
4618
4619 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4617.171 kb on + strand, within ABIE41_RS22425 at 4617.172 kb on - strand, within ABIE41_RS22425 at 4617.912 kb on + strand at 4617.912 kb on + strand at 4617.913 kb on - strand at 4618.978 kb on - strand at 4618.978 kb on - strand at 4619.136 kb on - strand, within ABIE41_RS22440 at 4619.136 kb on - strand, within ABIE41_RS22440
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,617,171 + ABIE41_RS22425 0.36 +0.4 4,617,172 - ABIE41_RS22425 0.36 +1.4 4,617,912 + +0.1 4,617,912 + +1.0 4,617,913 - +0.9 4,618,978 - -0.7 4,618,978 - -0.7 4,619,136 - ABIE41_RS22440 0.12 -2.9 4,619,136 - ABIE41_RS22440 0.12 -0.7
Or see this region's nucleotide sequence