Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS21095 and ABIE41_RS21100 are separated by 187 nucleotides ABIE41_RS21100 and ABIE41_RS21105 are separated by 117 nucleotides ABIE41_RS21105 and ABIE41_RS21110 overlap by 4 nucleotides ABIE41_RS21110 and ABIE41_RS21115 are separated by 21 nucleotides ABIE41_RS21115 and ABIE41_RS21120 are separated by 88 nucleotides
ABIE41_RS21095: ABIE41_RS21095 - hypothetical protein, at 4,338,191 to 4,338,442
_RS21095
ABIE41_RS21100: ABIE41_RS21100 - L,D-transpeptidase, at 4,338,630 to 4,339,208
_RS21100
ABIE41_RS21105: ABIE41_RS21105 - amidase, at 4,339,326 to 4,340,498
_RS21105
ABIE41_RS21110: ABIE41_RS21110 - oxalurate catabolism protein HpxZ, at 4,340,495 to 4,340,899
_RS21110
ABIE41_RS21115: ABIE41_RS21115 - DUF971 domain-containing protein, at 4,340,921 to 4,341,293
_RS21115
ABIE41_RS21120: ABIE41_RS21120 - GTP 3',8-cyclase MoaA, at 4,341,382 to 4,342,491
_RS21120
Position (kb) 4339
4340
4341 Strain fitness (log2 ratio) -1
0
1
2 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.374 kb on + strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.375 kb on - strand, within ABIE41_RS21095 at 4338.792 kb on + strand, within ABIE41_RS21100 at 4338.793 kb on - strand, within ABIE41_RS21100 at 4338.793 kb on - strand, within ABIE41_RS21100 at 4338.849 kb on + strand, within ABIE41_RS21100 at 4338.849 kb on + strand, within ABIE41_RS21100 at 4339.164 kb on + strand at 4339.164 kb on + strand at 4339.165 kb on - strand at 4339.675 kb on + strand, within ABIE41_RS21105 at 4339.676 kb on - strand, within ABIE41_RS21105 at 4339.755 kb on + strand, within ABIE41_RS21105 at 4339.756 kb on - strand, within ABIE41_RS21105 at 4339.756 kb on - strand, within ABIE41_RS21105 at 4340.168 kb on + strand, within ABIE41_RS21105 at 4340.168 kb on + strand, within ABIE41_RS21105 at 4340.169 kb on - strand, within ABIE41_RS21105 at 4340.558 kb on + strand, within ABIE41_RS21110 at 4340.558 kb on + strand, within ABIE41_RS21110 at 4340.559 kb on - strand, within ABIE41_RS21110 at 4340.559 kb on - strand, within ABIE41_RS21110 at 4340.559 kb on - strand, within ABIE41_RS21110 at 4340.894 kb on + strand at 4340.977 kb on - strand, within ABIE41_RS21115 at 4340.977 kb on - strand, within ABIE41_RS21115 at 4341.023 kb on - strand, within ABIE41_RS21115 at 4341.023 kb on - strand, within ABIE41_RS21115 at 4341.066 kb on + strand, within ABIE41_RS21115 at 4341.079 kb on + strand, within ABIE41_RS21115 at 4341.080 kb on - strand, within ABIE41_RS21115 at 4341.080 kb on - strand, within ABIE41_RS21115 at 4341.080 kb on - strand, within ABIE41_RS21115 at 4341.389 kb on + strand at 4341.389 kb on + strand at 4341.389 kb on + strand at 4341.389 kb on + strand at 4341.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 4,338,374 + ABIE41_RS21095 0.73 -0.4 4,338,374 + ABIE41_RS21095 0.73 -0.7 4,338,374 + ABIE41_RS21095 0.73 +0.9 4,338,374 + ABIE41_RS21095 0.73 +0.7 4,338,374 + ABIE41_RS21095 0.73 +0.3 4,338,374 + ABIE41_RS21095 0.73 +0.2 4,338,375 - ABIE41_RS21095 0.73 +1.2 4,338,375 - ABIE41_RS21095 0.73 -0.1 4,338,375 - ABIE41_RS21095 0.73 +1.5 4,338,375 - ABIE41_RS21095 0.73 +0.2 4,338,375 - ABIE41_RS21095 0.73 +1.0 4,338,375 - ABIE41_RS21095 0.73 -0.4 4,338,792 + ABIE41_RS21100 0.28 +0.5 4,338,793 - ABIE41_RS21100 0.28 -0.9 4,338,793 - ABIE41_RS21100 0.28 +0.8 4,338,849 + ABIE41_RS21100 0.38 -0.1 4,338,849 + ABIE41_RS21100 0.38 +1.5 4,339,164 + +0.3 4,339,164 + +0.3 4,339,165 - -0.7 4,339,675 + ABIE41_RS21105 0.30 +1.2 4,339,676 - ABIE41_RS21105 0.30 +0.3 4,339,755 + ABIE41_RS21105 0.37 -0.2 4,339,756 - ABIE41_RS21105 0.37 +1.0 4,339,756 - ABIE41_RS21105 0.37 +0.6 4,340,168 + ABIE41_RS21105 0.72 -0.1 4,340,168 + ABIE41_RS21105 0.72 -0.2 4,340,169 - ABIE41_RS21105 0.72 +1.7 4,340,558 + ABIE41_RS21110 0.16 +0.9 4,340,558 + ABIE41_RS21110 0.16 -0.4 4,340,559 - ABIE41_RS21110 0.16 -0.9 4,340,559 - ABIE41_RS21110 0.16 +1.9 4,340,559 - ABIE41_RS21110 0.16 +2.1 4,340,894 + +0.1 4,340,977 - ABIE41_RS21115 0.15 -0.1 4,340,977 - ABIE41_RS21115 0.15 -0.3 4,341,023 - ABIE41_RS21115 0.27 +0.5 4,341,023 - ABIE41_RS21115 0.27 +0.2 4,341,066 + ABIE41_RS21115 0.39 -0.3 4,341,079 + ABIE41_RS21115 0.42 -0.4 4,341,080 - ABIE41_RS21115 0.43 -0.7 4,341,080 - ABIE41_RS21115 0.43 +0.9 4,341,080 - ABIE41_RS21115 0.43 -1.3 4,341,389 + +1.1 4,341,389 + +1.4 4,341,389 + -0.2 4,341,389 + -0.2 4,341,389 + -0.4
Or see this region's nucleotide sequence