Experiment: NAG (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS15195 and ABIE41_RS15200 are separated by 53 nucleotides ABIE41_RS15200 and ABIE41_RS15205 are separated by 31 nucleotides ABIE41_RS15205 and ABIE41_RS15210 are separated by 177 nucleotides
ABIE41_RS15195: ABIE41_RS15195 - MFS transporter, at 3,108,819 to 3,110,270
_RS15195
ABIE41_RS15200: ABIE41_RS15200 - hypothetical protein, at 3,110,324 to 3,110,947
_RS15200
ABIE41_RS15205: ABIE41_RS15205 - RlmE family RNA methyltransferase, at 3,110,979 to 3,111,659
_RS15205
ABIE41_RS15210: ABIE41_RS15210 - Ppx/GppA phosphatase family protein, at 3,111,837 to 3,113,042
_RS15210
Position (kb) 3110
3111
3112 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3110.357 kb on + strand at 3110.358 kb on - strand at 3110.472 kb on - strand, within ABIE41_RS15200 at 3110.900 kb on + strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3110.901 kb on - strand at 3112.028 kb on - strand, within ABIE41_RS15210 at 3112.065 kb on - strand, within ABIE41_RS15210
Per-strain Table
Position Strand Gene LocusTag Fraction NAG (C) remove 3,110,357 + +0.3 3,110,358 - -0.1 3,110,472 - ABIE41_RS15200 0.24 -1.3 3,110,900 + +1.6 3,110,901 - +0.5 3,110,901 - -0.7 3,110,901 - -0.5 3,110,901 - -0.4 3,110,901 - -2.4 3,112,028 - ABIE41_RS15210 0.16 +2.6 3,112,065 - ABIE41_RS15210 0.19 +0.0
Or see this region's nucleotide sequence