Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07580

Experiment: NAG (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS07570 and ABIE41_RS07575 are separated by 123 nucleotidesABIE41_RS07575 and ABIE41_RS07580 are separated by 17 nucleotidesABIE41_RS07580 and ABIE41_RS07585 are separated by 117 nucleotides ABIE41_RS07570: ABIE41_RS07570 - ribosome silencing factor, at 1,552,319 to 1,552,675 _RS07570 ABIE41_RS07575: ABIE41_RS07575 - nicotinate-nucleotide adenylyltransferase, at 1,552,799 to 1,553,422 _RS07575 ABIE41_RS07580: ABIE41_RS07580 - glutamate-5-semialdehyde dehydrogenase, at 1,553,440 to 1,554,681 _RS07580 ABIE41_RS07585: ABIE41_RS07585 - glutamate 5-kinase, at 1,554,799 to 1,555,941 _RS07585 Position (kb) 1553 1554 1555Strain fitness (log2 ratio) -2 -1 0 1at 1552.736 kb on - strandat 1552.778 kb on + strandat 1552.779 kb on - strandat 1554.801 kb on - strandat 1554.801 kb on - strandat 1554.801 kb on - strandat 1554.801 kb on - strandat 1554.801 kb on - strandat 1554.801 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG (C)
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1,552,736 - -0.9
1,552,778 + +1.1
1,552,779 - -0.0
1,554,801 - -0.2
1,554,801 - +0.3
1,554,801 - +0.9
1,554,801 - -2.6
1,554,801 - +0.0
1,554,801 - -0.3

Or see this region's nucleotide sequence