Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS24905 and ABIE40_RS24910 are separated by 241 nucleotides ABIE40_RS24910 and ABIE40_RS24915 are separated by 224 nucleotides
ABIE40_RS24905: ABIE40_RS24905 - TolC family outer membrane protein, at 1,146,452 to 1,147,870
_RS24905
ABIE40_RS24910: ABIE40_RS24910 - NmrA family NAD(P)-binding protein, at 1,148,112 to 1,148,978
_RS24910
ABIE40_RS24915: ABIE40_RS24915 - helix-turn-helix domain-containing protein, at 1,149,203 to 1,150,168
_RS24915
Position (kb) 1148
1149 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1147.352 kb on + strand, within ABIE40_RS24905 at 1147.353 kb on - strand, within ABIE40_RS24905 at 1147.353 kb on - strand, within ABIE40_RS24905 at 1147.479 kb on + strand, within ABIE40_RS24905 at 1147.479 kb on + strand, within ABIE40_RS24905 at 1147.578 kb on + strand, within ABIE40_RS24905 at 1147.578 kb on + strand, within ABIE40_RS24905 at 1147.579 kb on - strand, within ABIE40_RS24905 at 1147.771 kb on + strand at 1147.772 kb on - strand at 1147.772 kb on - strand at 1147.920 kb on + strand at 1147.963 kb on + strand at 1147.964 kb on - strand at 1148.058 kb on + strand at 1148.083 kb on + strand at 1148.111 kb on - strand at 1148.319 kb on + strand, within ABIE40_RS24910 at 1148.395 kb on + strand, within ABIE40_RS24910 at 1148.395 kb on + strand, within ABIE40_RS24910 at 1148.536 kb on + strand, within ABIE40_RS24910 at 1148.536 kb on + strand, within ABIE40_RS24910 at 1148.536 kb on + strand, within ABIE40_RS24910 at 1148.536 kb on + strand, within ABIE40_RS24910 at 1148.536 kb on + strand, within ABIE40_RS24910 at 1148.537 kb on - strand, within ABIE40_RS24910 at 1148.537 kb on - strand, within ABIE40_RS24910 at 1148.537 kb on - strand, within ABIE40_RS24910 at 1148.764 kb on + strand, within ABIE40_RS24910 at 1148.765 kb on - strand, within ABIE40_RS24910 at 1148.765 kb on - strand, within ABIE40_RS24910 at 1148.993 kb on + strand at 1149.033 kb on + strand at 1149.033 kb on + strand at 1149.033 kb on + strand at 1149.063 kb on + strand at 1149.064 kb on - strand at 1149.143 kb on + strand at 1149.342 kb on + strand, within ABIE40_RS24915 at 1149.670 kb on + strand, within ABIE40_RS24915 at 1149.671 kb on - strand, within ABIE40_RS24915 at 1149.671 kb on - strand, within ABIE40_RS24915 at 1149.785 kb on + strand, within ABIE40_RS24915 at 1149.822 kb on - strand, within ABIE40_RS24915 at 1149.822 kb on - strand, within ABIE40_RS24915 at 1149.822 kb on - strand, within ABIE40_RS24915
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,147,352 + ABIE40_RS24905 0.63 -0.2 1,147,353 - ABIE40_RS24905 0.63 +0.0 1,147,353 - ABIE40_RS24905 0.63 +0.7 1,147,479 + ABIE40_RS24905 0.72 +0.6 1,147,479 + ABIE40_RS24905 0.72 +1.3 1,147,578 + ABIE40_RS24905 0.79 +0.4 1,147,578 + ABIE40_RS24905 0.79 -0.1 1,147,579 - ABIE40_RS24905 0.79 +3.8 1,147,771 + +1.0 1,147,772 - +1.6 1,147,772 - -2.1 1,147,920 + +0.6 1,147,963 + +0.3 1,147,964 - +0.1 1,148,058 + +0.9 1,148,083 + -0.1 1,148,111 - -1.0 1,148,319 + ABIE40_RS24910 0.24 +0.2 1,148,395 + ABIE40_RS24910 0.33 -1.1 1,148,395 + ABIE40_RS24910 0.33 -0.2 1,148,536 + ABIE40_RS24910 0.49 +0.5 1,148,536 + ABIE40_RS24910 0.49 +0.1 1,148,536 + ABIE40_RS24910 0.49 +0.9 1,148,536 + ABIE40_RS24910 0.49 -1.2 1,148,536 + ABIE40_RS24910 0.49 +0.3 1,148,537 - ABIE40_RS24910 0.49 -0.4 1,148,537 - ABIE40_RS24910 0.49 +1.6 1,148,537 - ABIE40_RS24910 0.49 +0.7 1,148,764 + ABIE40_RS24910 0.75 +1.3 1,148,765 - ABIE40_RS24910 0.75 +0.8 1,148,765 - ABIE40_RS24910 0.75 -0.3 1,148,993 + -0.2 1,149,033 + -0.9 1,149,033 + +0.7 1,149,033 + -0.1 1,149,063 + +0.9 1,149,064 - -0.0 1,149,143 + -0.6 1,149,342 + ABIE40_RS24915 0.14 -1.7 1,149,670 + ABIE40_RS24915 0.48 +0.6 1,149,671 - ABIE40_RS24915 0.48 +0.1 1,149,671 - ABIE40_RS24915 0.48 -0.5 1,149,785 + ABIE40_RS24915 0.60 +0.3 1,149,822 - ABIE40_RS24915 0.64 -2.7 1,149,822 - ABIE40_RS24915 0.64 -1.7 1,149,822 - ABIE40_RS24915 0.64 -0.5
Or see this region's nucleotide sequence