Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS09265 and ABIE40_RS09270 overlap by 4 nucleotides ABIE40_RS09270 and ABIE40_RS09275 overlap by 4 nucleotides ABIE40_RS09275 and ABIE40_RS09280 are separated by 15 nucleotides
ABIE40_RS09265: ABIE40_RS09265 - galactofuranose ABC transporter, ATP-binding protein YtfR, at 1,783,858 to 1,785,381
_RS09265
ABIE40_RS09270: ABIE40_RS09270 - ABC transporter permease, at 1,785,378 to 1,786,406
_RS09270
ABIE40_RS09275: ABIE40_RS09275 - galactofuranose ABC transporter, permease protein YjfF, at 1,786,403 to 1,787,371
_RS09275
ABIE40_RS09280: ABIE40_RS09280 - FadR/GntR family transcriptional regulator, at 1,787,387 to 1,788,139
_RS09280
Position (kb) 1785
1786
1787 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1784.566 kb on - strand, within ABIE40_RS09265 at 1784.566 kb on - strand, within ABIE40_RS09265 at 1784.647 kb on + strand, within ABIE40_RS09265 at 1784.647 kb on + strand, within ABIE40_RS09265 at 1784.648 kb on - strand, within ABIE40_RS09265 at 1784.662 kb on + strand, within ABIE40_RS09265 at 1784.898 kb on + strand, within ABIE40_RS09265 at 1784.899 kb on - strand, within ABIE40_RS09265 at 1785.007 kb on + strand, within ABIE40_RS09265 at 1785.007 kb on + strand, within ABIE40_RS09265 at 1785.007 kb on + strand, within ABIE40_RS09265 at 1785.008 kb on - strand, within ABIE40_RS09265 at 1785.008 kb on - strand, within ABIE40_RS09265 at 1785.008 kb on - strand, within ABIE40_RS09265 at 1785.008 kb on - strand, within ABIE40_RS09265 at 1785.008 kb on - strand, within ABIE40_RS09265 at 1785.063 kb on - strand, within ABIE40_RS09265 at 1785.063 kb on - strand, within ABIE40_RS09265 at 1785.295 kb on - strand at 1785.295 kb on - strand at 1785.315 kb on + strand at 1785.315 kb on + strand at 1785.315 kb on + strand at 1785.316 kb on - strand at 1785.316 kb on - strand at 1785.316 kb on - strand at 1785.316 kb on - strand at 1785.321 kb on + strand at 1785.675 kb on + strand, within ABIE40_RS09270 at 1785.675 kb on + strand, within ABIE40_RS09270 at 1785.675 kb on + strand, within ABIE40_RS09270 at 1785.676 kb on - strand, within ABIE40_RS09270 at 1785.676 kb on - strand, within ABIE40_RS09270 at 1785.880 kb on - strand, within ABIE40_RS09270 at 1786.013 kb on + strand, within ABIE40_RS09270 at 1786.014 kb on - strand, within ABIE40_RS09270 at 1786.038 kb on + strand, within ABIE40_RS09270 at 1786.038 kb on + strand, within ABIE40_RS09270 at 1786.038 kb on + strand, within ABIE40_RS09270 at 1786.038 kb on + strand, within ABIE40_RS09270 at 1786.038 kb on + strand, within ABIE40_RS09270 at 1786.039 kb on - strand, within ABIE40_RS09270 at 1786.039 kb on - strand, within ABIE40_RS09270 at 1786.039 kb on - strand, within ABIE40_RS09270 at 1786.039 kb on - strand, within ABIE40_RS09270 at 1786.039 kb on - strand, within ABIE40_RS09270 at 1786.039 kb on - strand, within ABIE40_RS09270 at 1786.039 kb on - strand, within ABIE40_RS09270 at 1786.040 kb on + strand, within ABIE40_RS09270 at 1786.040 kb on + strand, within ABIE40_RS09270 at 1786.040 kb on + strand, within ABIE40_RS09270 at 1786.238 kb on + strand, within ABIE40_RS09270 at 1786.238 kb on + strand, within ABIE40_RS09270 at 1786.238 kb on + strand, within ABIE40_RS09270 at 1786.238 kb on + strand, within ABIE40_RS09270 at 1786.239 kb on - strand, within ABIE40_RS09270 at 1786.239 kb on - strand, within ABIE40_RS09270 at 1786.239 kb on - strand, within ABIE40_RS09270 at 1786.244 kb on + strand, within ABIE40_RS09270 at 1786.245 kb on - strand, within ABIE40_RS09270 at 1786.415 kb on + strand at 1786.445 kb on + strand at 1786.457 kb on + strand at 1786.457 kb on + strand at 1786.457 kb on + strand at 1786.458 kb on - strand at 1786.478 kb on + strand at 1786.591 kb on - strand, within ABIE40_RS09275 at 1786.796 kb on + strand, within ABIE40_RS09275 at 1786.796 kb on + strand, within ABIE40_RS09275 at 1786.796 kb on + strand, within ABIE40_RS09275 at 1786.796 kb on + strand, within ABIE40_RS09275 at 1786.797 kb on + strand, within ABIE40_RS09275 at 1786.797 kb on - strand, within ABIE40_RS09275 at 1786.797 kb on - strand, within ABIE40_RS09275 at 1786.797 kb on - strand, within ABIE40_RS09275 at 1786.797 kb on - strand, within ABIE40_RS09275 at 1786.797 kb on - strand, within ABIE40_RS09275 at 1786.797 kb on - strand, within ABIE40_RS09275 at 1786.836 kb on - strand, within ABIE40_RS09275 at 1786.838 kb on + strand, within ABIE40_RS09275 at 1786.839 kb on - strand, within ABIE40_RS09275 at 1786.839 kb on - strand, within ABIE40_RS09275 at 1786.839 kb on - strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.859 kb on + strand, within ABIE40_RS09275 at 1786.860 kb on - strand, within ABIE40_RS09275 at 1786.860 kb on - strand, within ABIE40_RS09275 at 1786.860 kb on - strand, within ABIE40_RS09275 at 1786.860 kb on - strand, within ABIE40_RS09275 at 1786.860 kb on - strand, within ABIE40_RS09275 at 1786.860 kb on - strand, within ABIE40_RS09275 at 1786.862 kb on + strand, within ABIE40_RS09275 at 1786.906 kb on + strand, within ABIE40_RS09275 at 1786.907 kb on - strand, within ABIE40_RS09275 at 1787.042 kb on + strand, within ABIE40_RS09275 at 1787.042 kb on + strand, within ABIE40_RS09275 at 1787.042 kb on + strand, within ABIE40_RS09275 at 1787.042 kb on + strand, within ABIE40_RS09275 at 1787.043 kb on - strand, within ABIE40_RS09275 at 1787.043 kb on - strand, within ABIE40_RS09275 at 1787.071 kb on - strand, within ABIE40_RS09275 at 1787.093 kb on + strand, within ABIE40_RS09275 at 1787.093 kb on + strand, within ABIE40_RS09275 at 1787.093 kb on + strand, within ABIE40_RS09275 at 1787.093 kb on + strand, within ABIE40_RS09275 at 1787.094 kb on - strand, within ABIE40_RS09275 at 1787.094 kb on - strand, within ABIE40_RS09275 at 1787.094 kb on - strand, within ABIE40_RS09275 at 1787.095 kb on + strand, within ABIE40_RS09275 at 1787.095 kb on + strand, within ABIE40_RS09275 at 1787.095 kb on + strand, within ABIE40_RS09275 at 1787.095 kb on + strand, within ABIE40_RS09275 at 1787.095 kb on + strand, within ABIE40_RS09275 at 1787.095 kb on + strand, within ABIE40_RS09275 at 1787.095 kb on + strand, within ABIE40_RS09275 at 1787.096 kb on - strand, within ABIE40_RS09275 at 1787.096 kb on - strand, within ABIE40_RS09275 at 1787.096 kb on - strand, within ABIE40_RS09275 at 1787.096 kb on - strand, within ABIE40_RS09275 at 1787.096 kb on - strand, within ABIE40_RS09275 at 1787.096 kb on - strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.243 kb on + strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.244 kb on - strand, within ABIE40_RS09275 at 1787.363 kb on + strand at 1787.363 kb on + strand at 1787.363 kb on + strand at 1787.363 kb on + strand at 1787.363 kb on + strand at 1787.363 kb on + strand at 1787.363 kb on + strand at 1787.364 kb on - strand at 1787.364 kb on - strand at 1787.364 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,784,566 - ABIE40_RS09265 0.46 +0.2 1,784,566 - ABIE40_RS09265 0.46 +1.6 1,784,647 + ABIE40_RS09265 0.52 +1.4 1,784,647 + ABIE40_RS09265 0.52 -1.5 1,784,648 - ABIE40_RS09265 0.52 -0.9 1,784,662 + ABIE40_RS09265 0.53 -0.6 1,784,898 + ABIE40_RS09265 0.68 -2.2 1,784,899 - ABIE40_RS09265 0.68 -0.9 1,785,007 + ABIE40_RS09265 0.75 +0.2 1,785,007 + ABIE40_RS09265 0.75 -2.5 1,785,007 + ABIE40_RS09265 0.75 -2.6 1,785,008 - ABIE40_RS09265 0.75 +3.2 1,785,008 - ABIE40_RS09265 0.75 -0.1 1,785,008 - ABIE40_RS09265 0.75 +0.2 1,785,008 - ABIE40_RS09265 0.75 +0.5 1,785,008 - ABIE40_RS09265 0.75 +0.4 1,785,063 - ABIE40_RS09265 0.79 -1.6 1,785,063 - ABIE40_RS09265 0.79 -0.1 1,785,295 - +1.4 1,785,295 - -0.1 1,785,315 + +0.1 1,785,315 + +1.0 1,785,315 + +1.4 1,785,316 - +0.1 1,785,316 - -1.2 1,785,316 - -0.1 1,785,316 - +0.1 1,785,321 + -2.3 1,785,675 + ABIE40_RS09270 0.29 -0.6 1,785,675 + ABIE40_RS09270 0.29 -0.7 1,785,675 + ABIE40_RS09270 0.29 +0.6 1,785,676 - ABIE40_RS09270 0.29 -3.5 1,785,676 - ABIE40_RS09270 0.29 +0.7 1,785,880 - ABIE40_RS09270 0.49 -1.1 1,786,013 + ABIE40_RS09270 0.62 -1.5 1,786,014 - ABIE40_RS09270 0.62 +0.8 1,786,038 + ABIE40_RS09270 0.64 +0.8 1,786,038 + ABIE40_RS09270 0.64 -0.5 1,786,038 + ABIE40_RS09270 0.64 +0.6 1,786,038 + ABIE40_RS09270 0.64 +0.3 1,786,038 + ABIE40_RS09270 0.64 -1.7 1,786,039 - ABIE40_RS09270 0.64 -1.2 1,786,039 - ABIE40_RS09270 0.64 -0.9 1,786,039 - ABIE40_RS09270 0.64 +0.1 1,786,039 - ABIE40_RS09270 0.64 +2.5 1,786,039 - ABIE40_RS09270 0.64 -1.5 1,786,039 - ABIE40_RS09270 0.64 -0.6 1,786,039 - ABIE40_RS09270 0.64 -0.6 1,786,040 + ABIE40_RS09270 0.64 +0.1 1,786,040 + ABIE40_RS09270 0.64 -0.2 1,786,040 + ABIE40_RS09270 0.64 -1.5 1,786,238 + ABIE40_RS09270 0.84 +0.8 1,786,238 + ABIE40_RS09270 0.84 -1.5 1,786,238 + ABIE40_RS09270 0.84 +1.7 1,786,238 + ABIE40_RS09270 0.84 -0.6 1,786,239 - ABIE40_RS09270 0.84 -0.6 1,786,239 - ABIE40_RS09270 0.84 -0.6 1,786,239 - ABIE40_RS09270 0.84 -0.7 1,786,244 + ABIE40_RS09270 0.84 -0.7 1,786,245 - ABIE40_RS09270 0.84 +2.7 1,786,415 + +1.6 1,786,445 + -0.5 1,786,457 + +0.3 1,786,457 + +0.6 1,786,457 + -0.6 1,786,458 - +0.7 1,786,478 + +0.2 1,786,591 - ABIE40_RS09275 0.19 +0.0 1,786,796 + ABIE40_RS09275 0.41 -0.1 1,786,796 + ABIE40_RS09275 0.41 +0.0 1,786,796 + ABIE40_RS09275 0.41 +0.0 1,786,796 + ABIE40_RS09275 0.41 +0.2 1,786,797 + ABIE40_RS09275 0.41 +0.8 1,786,797 - ABIE40_RS09275 0.41 -1.3 1,786,797 - ABIE40_RS09275 0.41 -0.1 1,786,797 - ABIE40_RS09275 0.41 -1.6 1,786,797 - ABIE40_RS09275 0.41 -0.1 1,786,797 - ABIE40_RS09275 0.41 -0.9 1,786,797 - ABIE40_RS09275 0.41 +0.3 1,786,836 - ABIE40_RS09275 0.45 +0.1 1,786,838 + ABIE40_RS09275 0.45 +1.4 1,786,839 - ABIE40_RS09275 0.45 -0.1 1,786,839 - ABIE40_RS09275 0.45 -0.3 1,786,839 - ABIE40_RS09275 0.45 +2.7 1,786,859 + ABIE40_RS09275 0.47 -0.6 1,786,859 + ABIE40_RS09275 0.47 -0.3 1,786,859 + ABIE40_RS09275 0.47 -0.5 1,786,859 + ABIE40_RS09275 0.47 -0.1 1,786,859 + ABIE40_RS09275 0.47 -1.6 1,786,859 + ABIE40_RS09275 0.47 +0.5 1,786,859 + ABIE40_RS09275 0.47 +0.3 1,786,859 + ABIE40_RS09275 0.47 -0.5 1,786,859 + ABIE40_RS09275 0.47 -0.6 1,786,860 - ABIE40_RS09275 0.47 +1.0 1,786,860 - ABIE40_RS09275 0.47 -0.4 1,786,860 - ABIE40_RS09275 0.47 +0.7 1,786,860 - ABIE40_RS09275 0.47 -0.8 1,786,860 - ABIE40_RS09275 0.47 +1.4 1,786,860 - ABIE40_RS09275 0.47 -1.5 1,786,862 + ABIE40_RS09275 0.47 +0.1 1,786,906 + ABIE40_RS09275 0.52 -2.3 1,786,907 - ABIE40_RS09275 0.52 +0.3 1,787,042 + ABIE40_RS09275 0.66 -0.1 1,787,042 + ABIE40_RS09275 0.66 -0.2 1,787,042 + ABIE40_RS09275 0.66 -0.8 1,787,042 + ABIE40_RS09275 0.66 -0.6 1,787,043 - ABIE40_RS09275 0.66 -1.5 1,787,043 - ABIE40_RS09275 0.66 -0.5 1,787,071 - ABIE40_RS09275 0.69 -1.4 1,787,093 + ABIE40_RS09275 0.71 +0.2 1,787,093 + ABIE40_RS09275 0.71 -0.3 1,787,093 + ABIE40_RS09275 0.71 +0.6 1,787,093 + ABIE40_RS09275 0.71 -0.5 1,787,094 - ABIE40_RS09275 0.71 -0.7 1,787,094 - ABIE40_RS09275 0.71 -0.0 1,787,094 - ABIE40_RS09275 0.71 +0.1 1,787,095 + ABIE40_RS09275 0.71 -2.6 1,787,095 + ABIE40_RS09275 0.71 +2.9 1,787,095 + ABIE40_RS09275 0.71 -0.2 1,787,095 + ABIE40_RS09275 0.71 +2.0 1,787,095 + ABIE40_RS09275 0.71 +1.4 1,787,095 + ABIE40_RS09275 0.71 +0.9 1,787,095 + ABIE40_RS09275 0.71 -0.1 1,787,096 - ABIE40_RS09275 0.72 -0.5 1,787,096 - ABIE40_RS09275 0.72 -0.4 1,787,096 - ABIE40_RS09275 0.72 -0.8 1,787,096 - ABIE40_RS09275 0.72 +1.4 1,787,096 - ABIE40_RS09275 0.72 -1.3 1,787,096 - ABIE40_RS09275 0.72 -0.6 1,787,243 + ABIE40_RS09275 0.87 +1.2 1,787,243 + ABIE40_RS09275 0.87 +0.4 1,787,243 + ABIE40_RS09275 0.87 -0.6 1,787,243 + ABIE40_RS09275 0.87 -1.6 1,787,243 + ABIE40_RS09275 0.87 +0.1 1,787,243 + ABIE40_RS09275 0.87 -1.3 1,787,243 + ABIE40_RS09275 0.87 -1.9 1,787,243 + ABIE40_RS09275 0.87 -1.8 1,787,244 - ABIE40_RS09275 0.87 -1.4 1,787,244 - ABIE40_RS09275 0.87 -0.6 1,787,244 - ABIE40_RS09275 0.87 -3.7 1,787,244 - ABIE40_RS09275 0.87 -0.8 1,787,244 - ABIE40_RS09275 0.87 -0.3 1,787,244 - ABIE40_RS09275 0.87 -1.2 1,787,244 - ABIE40_RS09275 0.87 -1.2 1,787,244 - ABIE40_RS09275 0.87 -0.7 1,787,244 - ABIE40_RS09275 0.87 -0.5 1,787,244 - ABIE40_RS09275 0.87 -0.1 1,787,244 - ABIE40_RS09275 0.87 +0.0 1,787,244 - ABIE40_RS09275 0.87 +0.4 1,787,244 - ABIE40_RS09275 0.87 -1.6 1,787,244 - ABIE40_RS09275 0.87 -0.2 1,787,244 - ABIE40_RS09275 0.87 -1.6 1,787,244 - ABIE40_RS09275 0.87 -1.8 1,787,244 - ABIE40_RS09275 0.87 -0.1 1,787,244 - ABIE40_RS09275 0.87 -0.1 1,787,363 + -0.2 1,787,363 + -0.4 1,787,363 + -1.0 1,787,363 + -0.5 1,787,363 + -0.1 1,787,363 + -1.4 1,787,363 + +0.7 1,787,364 - -1.3 1,787,364 - -1.9 1,787,364 - -0.6
Or see this region's nucleotide sequence