Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS09105 and ABIE40_RS09110 are separated by 110 nucleotides ABIE40_RS09110 and ABIE40_RS09115 are separated by 77 nucleotides ABIE40_RS09115 and ABIE40_RS09120 are separated by 44 nucleotides ABIE40_RS09120 and ABIE40_RS09125 overlap by 19 nucleotides
ABIE40_RS09105: ABIE40_RS09105 - D-amino-acid transaminase, at 1,755,303 to 1,756,166
_RS09105
ABIE40_RS09110: ABIE40_RS09110 - RNA chaperone Hfq, at 1,756,277 to 1,756,519
_RS09110
ABIE40_RS09115: ABIE40_RS09115 - GTPase HflX, at 1,756,597 to 1,757,928
_RS09115
ABIE40_RS09120: ABIE40_RS09120 - hypothetical protein, at 1,757,973 to 1,758,308
_RS09120
ABIE40_RS09125: ABIE40_RS09125 - NAD(P)/FAD-dependent oxidoreductase, at 1,758,290 to 1,759,519
_RS09125
Position (kb) 1756
1757
1758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1755.819 kb on + strand, within ABIE40_RS09105 at 1755.819 kb on + strand, within ABIE40_RS09105 at 1755.820 kb on - strand, within ABIE40_RS09105 at 1755.989 kb on + strand, within ABIE40_RS09105 at 1755.989 kb on + strand, within ABIE40_RS09105 at 1755.990 kb on - strand, within ABIE40_RS09105 at 1755.990 kb on - strand, within ABIE40_RS09105 at 1755.990 kb on - strand, within ABIE40_RS09105 at 1756.167 kb on + strand at 1756.167 kb on + strand at 1756.230 kb on + strand at 1756.230 kb on + strand at 1756.230 kb on + strand at 1756.548 kb on + strand at 1756.596 kb on + strand at 1756.596 kb on + strand at 1756.744 kb on + strand, within ABIE40_RS09115 at 1756.744 kb on + strand, within ABIE40_RS09115 at 1756.745 kb on - strand, within ABIE40_RS09115 at 1757.008 kb on + strand, within ABIE40_RS09115 at 1757.008 kb on + strand, within ABIE40_RS09115 at 1757.008 kb on + strand, within ABIE40_RS09115 at 1757.009 kb on - strand, within ABIE40_RS09115 at 1757.235 kb on + strand, within ABIE40_RS09115 at 1757.235 kb on + strand, within ABIE40_RS09115 at 1757.235 kb on + strand, within ABIE40_RS09115 at 1757.235 kb on + strand, within ABIE40_RS09115 at 1757.235 kb on + strand, within ABIE40_RS09115 at 1757.235 kb on + strand, within ABIE40_RS09115 at 1757.235 kb on + strand, within ABIE40_RS09115 at 1757.236 kb on - strand, within ABIE40_RS09115 at 1757.236 kb on - strand, within ABIE40_RS09115 at 1757.236 kb on - strand, within ABIE40_RS09115 at 1757.236 kb on - strand, within ABIE40_RS09115 at 1757.236 kb on - strand, within ABIE40_RS09115 at 1757.236 kb on - strand, within ABIE40_RS09115 at 1757.238 kb on + strand, within ABIE40_RS09115 at 1757.239 kb on - strand, within ABIE40_RS09115 at 1757.239 kb on - strand, within ABIE40_RS09115 at 1757.696 kb on + strand, within ABIE40_RS09115 at 1757.785 kb on + strand, within ABIE40_RS09115 at 1757.785 kb on + strand, within ABIE40_RS09115 at 1757.785 kb on + strand, within ABIE40_RS09115 at 1757.785 kb on + strand, within ABIE40_RS09115 at 1757.785 kb on + strand, within ABIE40_RS09115 at 1757.785 kb on + strand, within ABIE40_RS09115 at 1757.786 kb on - strand, within ABIE40_RS09115 at 1757.786 kb on - strand, within ABIE40_RS09115 at 1757.786 kb on - strand, within ABIE40_RS09115 at 1757.982 kb on - strand at 1757.985 kb on + strand at 1758.093 kb on + strand, within ABIE40_RS09120 at 1758.093 kb on + strand, within ABIE40_RS09120 at 1758.093 kb on + strand, within ABIE40_RS09120 at 1758.093 kb on + strand, within ABIE40_RS09120 at 1758.175 kb on - strand, within ABIE40_RS09120 at 1758.175 kb on - strand, within ABIE40_RS09120 at 1758.256 kb on - strand, within ABIE40_RS09120 at 1758.291 kb on + strand at 1758.293 kb on + strand at 1758.293 kb on + strand at 1758.483 kb on + strand, within ABIE40_RS09125 at 1758.484 kb on - strand, within ABIE40_RS09125 at 1758.516 kb on + strand, within ABIE40_RS09125 at 1758.516 kb on + strand, within ABIE40_RS09125 at 1758.516 kb on + strand, within ABIE40_RS09125 at 1758.516 kb on + strand, within ABIE40_RS09125 at 1758.517 kb on - strand, within ABIE40_RS09125 at 1758.517 kb on - strand, within ABIE40_RS09125 at 1758.526 kb on + strand, within ABIE40_RS09125 at 1758.625 kb on + strand, within ABIE40_RS09125 at 1758.625 kb on + strand, within ABIE40_RS09125 at 1758.626 kb on - strand, within ABIE40_RS09125 at 1758.626 kb on - strand, within ABIE40_RS09125 at 1758.626 kb on - strand, within ABIE40_RS09125 at 1758.685 kb on + strand, within ABIE40_RS09125 at 1758.712 kb on + strand, within ABIE40_RS09125 at 1758.712 kb on + strand, within ABIE40_RS09125 at 1758.712 kb on + strand, within ABIE40_RS09125 at 1758.712 kb on + strand, within ABIE40_RS09125 at 1758.712 kb on + strand, within ABIE40_RS09125 at 1758.713 kb on - strand, within ABIE40_RS09125
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,755,819 + ABIE40_RS09105 0.60 -0.8 1,755,819 + ABIE40_RS09105 0.60 +0.0 1,755,820 - ABIE40_RS09105 0.60 -0.0 1,755,989 + ABIE40_RS09105 0.79 -0.5 1,755,989 + ABIE40_RS09105 0.79 -1.3 1,755,990 - ABIE40_RS09105 0.80 +1.2 1,755,990 - ABIE40_RS09105 0.80 -0.7 1,755,990 - ABIE40_RS09105 0.80 -0.2 1,756,167 + +2.1 1,756,167 + +1.4 1,756,230 + +1.7 1,756,230 + +2.8 1,756,230 + +3.0 1,756,548 + +2.0 1,756,596 + +0.2 1,756,596 + +0.9 1,756,744 + ABIE40_RS09115 0.11 +0.1 1,756,744 + ABIE40_RS09115 0.11 +0.0 1,756,745 - ABIE40_RS09115 0.11 +0.6 1,757,008 + ABIE40_RS09115 0.31 -2.1 1,757,008 + ABIE40_RS09115 0.31 +0.3 1,757,008 + ABIE40_RS09115 0.31 -0.0 1,757,009 - ABIE40_RS09115 0.31 +0.3 1,757,235 + ABIE40_RS09115 0.48 +0.3 1,757,235 + ABIE40_RS09115 0.48 +1.3 1,757,235 + ABIE40_RS09115 0.48 -0.1 1,757,235 + ABIE40_RS09115 0.48 +0.6 1,757,235 + ABIE40_RS09115 0.48 -1.5 1,757,235 + ABIE40_RS09115 0.48 +0.1 1,757,235 + ABIE40_RS09115 0.48 -0.9 1,757,236 - ABIE40_RS09115 0.48 +1.9 1,757,236 - ABIE40_RS09115 0.48 +0.1 1,757,236 - ABIE40_RS09115 0.48 -1.0 1,757,236 - ABIE40_RS09115 0.48 -1.7 1,757,236 - ABIE40_RS09115 0.48 +0.9 1,757,236 - ABIE40_RS09115 0.48 -1.5 1,757,238 + ABIE40_RS09115 0.48 -2.9 1,757,239 - ABIE40_RS09115 0.48 +0.6 1,757,239 - ABIE40_RS09115 0.48 +0.2 1,757,696 + ABIE40_RS09115 0.83 -0.7 1,757,785 + ABIE40_RS09115 0.89 -1.1 1,757,785 + ABIE40_RS09115 0.89 -0.1 1,757,785 + ABIE40_RS09115 0.89 +0.9 1,757,785 + ABIE40_RS09115 0.89 +1.4 1,757,785 + ABIE40_RS09115 0.89 +1.4 1,757,785 + ABIE40_RS09115 0.89 -0.1 1,757,786 - ABIE40_RS09115 0.89 -0.1 1,757,786 - ABIE40_RS09115 0.89 +0.1 1,757,786 - ABIE40_RS09115 0.89 +1.4 1,757,982 - -0.2 1,757,985 + -0.6 1,758,093 + ABIE40_RS09120 0.36 -1.3 1,758,093 + ABIE40_RS09120 0.36 +0.5 1,758,093 + ABIE40_RS09120 0.36 +1.4 1,758,093 + ABIE40_RS09120 0.36 -1.0 1,758,175 - ABIE40_RS09120 0.60 +2.5 1,758,175 - ABIE40_RS09120 0.60 +0.7 1,758,256 - ABIE40_RS09120 0.84 +0.6 1,758,291 + +0.1 1,758,293 + -0.1 1,758,293 + -0.4 1,758,483 + ABIE40_RS09125 0.16 -1.6 1,758,484 - ABIE40_RS09125 0.16 -1.6 1,758,516 + ABIE40_RS09125 0.18 -2.0 1,758,516 + ABIE40_RS09125 0.18 -0.2 1,758,516 + ABIE40_RS09125 0.18 -0.4 1,758,516 + ABIE40_RS09125 0.18 -0.1 1,758,517 - ABIE40_RS09125 0.18 -0.6 1,758,517 - ABIE40_RS09125 0.18 +2.1 1,758,526 + ABIE40_RS09125 0.19 +2.9 1,758,625 + ABIE40_RS09125 0.27 +0.3 1,758,625 + ABIE40_RS09125 0.27 -0.1 1,758,626 - ABIE40_RS09125 0.27 +1.4 1,758,626 - ABIE40_RS09125 0.27 +0.3 1,758,626 - ABIE40_RS09125 0.27 -0.5 1,758,685 + ABIE40_RS09125 0.32 -0.8 1,758,712 + ABIE40_RS09125 0.34 +1.0 1,758,712 + ABIE40_RS09125 0.34 +0.0 1,758,712 + ABIE40_RS09125 0.34 -1.3 1,758,712 + ABIE40_RS09125 0.34 +0.0 1,758,712 + ABIE40_RS09125 0.34 +3.2 1,758,713 - ABIE40_RS09125 0.34 -0.9
Or see this region's nucleotide sequence