Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04065 and ABIE40_RS04070 are separated by 147 nucleotides ABIE40_RS04070 and ABIE40_RS04075 overlap by 1 nucleotides ABIE40_RS04075 and ABIE40_RS04080 are separated by 4 nucleotides ABIE40_RS04080 and ABIE40_RS04085 are separated by 58 nucleotides
ABIE40_RS04065: ABIE40_RS04065 - cytochrome c oxidase subunit I, at 806,415 to 808,112
_RS04065
ABIE40_RS04070: ABIE40_RS04070 - heme o synthase, at 808,260 to 809,216
_RS04070
ABIE40_RS04075: ABIE40_RS04075 - hypothetical protein, at 809,216 to 809,353
_RS04075
ABIE40_RS04080: ABIE40_RS04080 - cytochrome c oxidase assembly protein, at 809,358 to 809,966
_RS04080
ABIE40_RS04085: ABIE40_RS04085 - cytochrome c oxidase subunit 3, at 810,025 to 810,903
_RS04085
Position (kb) 808
809
810 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 807.261 kb on + strand, within ABIE40_RS04065 at 807.261 kb on + strand, within ABIE40_RS04065 at 807.261 kb on + strand, within ABIE40_RS04065 at 807.300 kb on + strand, within ABIE40_RS04065 at 807.300 kb on + strand, within ABIE40_RS04065 at 807.301 kb on - strand, within ABIE40_RS04065 at 807.301 kb on - strand, within ABIE40_RS04065 at 807.375 kb on + strand, within ABIE40_RS04065 at 807.390 kb on + strand, within ABIE40_RS04065 at 807.390 kb on + strand, within ABIE40_RS04065 at 807.390 kb on + strand, within ABIE40_RS04065 at 807.391 kb on - strand, within ABIE40_RS04065 at 807.400 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.444 kb on + strand, within ABIE40_RS04065 at 807.445 kb on - strand, within ABIE40_RS04065 at 807.445 kb on - strand, within ABIE40_RS04065 at 807.477 kb on + strand, within ABIE40_RS04065 at 807.478 kb on - strand, within ABIE40_RS04065 at 807.478 kb on - strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.678 kb on + strand, within ABIE40_RS04065 at 807.679 kb on - strand, within ABIE40_RS04065 at 807.679 kb on - strand, within ABIE40_RS04065 at 807.679 kb on - strand, within ABIE40_RS04065 at 807.681 kb on + strand, within ABIE40_RS04065 at 807.702 kb on + strand, within ABIE40_RS04065 at 807.702 kb on + strand, within ABIE40_RS04065 at 807.750 kb on + strand, within ABIE40_RS04065 at 807.751 kb on - strand, within ABIE40_RS04065 at 807.751 kb on - strand, within ABIE40_RS04065 at 807.774 kb on + strand, within ABIE40_RS04065 at 807.774 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.780 kb on + strand, within ABIE40_RS04065 at 807.781 kb on - strand, within ABIE40_RS04065 at 807.781 kb on - strand, within ABIE40_RS04065 at 807.886 kb on - strand, within ABIE40_RS04065 at 807.886 kb on - strand, within ABIE40_RS04065 at 807.894 kb on + strand, within ABIE40_RS04065 at 807.921 kb on + strand, within ABIE40_RS04065 at 807.921 kb on + strand, within ABIE40_RS04065 at 807.922 kb on - strand, within ABIE40_RS04065 at 807.922 kb on - strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.942 kb on + strand, within ABIE40_RS04065 at 807.975 kb on + strand at 807.975 kb on + strand at 807.975 kb on + strand at 808.078 kb on - strand at 808.078 kb on - strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.110 kb on + strand at 808.111 kb on - strand at 808.111 kb on - strand at 808.258 kb on + strand at 808.258 kb on + strand at 808.259 kb on - strand at 808.259 kb on - strand at 808.336 kb on - strand at 808.494 kb on + strand, within ABIE40_RS04070 at 808.494 kb on + strand, within ABIE40_RS04070 at 808.674 kb on + strand, within ABIE40_RS04070 at 808.687 kb on - strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.688 kb on + strand, within ABIE40_RS04070 at 808.689 kb on - strand, within ABIE40_RS04070 at 808.689 kb on - strand, within ABIE40_RS04070 at 808.878 kb on + strand, within ABIE40_RS04070 at 808.950 kb on + strand, within ABIE40_RS04070 at 809.050 kb on + strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.051 kb on - strand, within ABIE40_RS04070 at 809.137 kb on - strand at 809.137 kb on - strand at 809.207 kb on + strand at 809.208 kb on - strand at 809.208 kb on - strand at 809.312 kb on + strand, within ABIE40_RS04075 at 809.313 kb on - strand, within ABIE40_RS04075 at 809.313 kb on - strand, within ABIE40_RS04075 at 809.313 kb on - strand, within ABIE40_RS04075 at 809.324 kb on + strand, within ABIE40_RS04075 at 809.457 kb on + strand, within ABIE40_RS04080 at 809.457 kb on + strand, within ABIE40_RS04080 at 809.458 kb on - strand, within ABIE40_RS04080 at 809.458 kb on - strand, within ABIE40_RS04080 at 809.458 kb on - strand, within ABIE40_RS04080 at 809.742 kb on + strand, within ABIE40_RS04080 at 809.742 kb on + strand, within ABIE40_RS04080 at 809.743 kb on - strand, within ABIE40_RS04080 at 809.743 kb on - strand, within ABIE40_RS04080 at 809.823 kb on + strand, within ABIE40_RS04080 at 809.840 kb on + strand, within ABIE40_RS04080 at 809.886 kb on + strand, within ABIE40_RS04080 at 809.886 kb on + strand, within ABIE40_RS04080 at 809.887 kb on - strand, within ABIE40_RS04080 at 809.887 kb on - strand, within ABIE40_RS04080 at 809.887 kb on - strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.888 kb on + strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.889 kb on - strand, within ABIE40_RS04080 at 809.895 kb on + strand, within ABIE40_RS04080 at 810.020 kb on + strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.021 kb on - strand at 810.055 kb on + strand at 810.055 kb on + strand at 810.055 kb on + strand at 810.056 kb on - strand at 810.056 kb on - strand at 810.056 kb on - strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.060 kb on + strand at 810.061 kb on - strand at 810.061 kb on - strand at 810.061 kb on - strand at 810.133 kb on + strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.134 kb on - strand, within ABIE40_RS04085 at 810.142 kb on + strand, within ABIE40_RS04085 at 810.143 kb on - strand, within ABIE40_RS04085
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 807,261 + ABIE40_RS04065 0.50 -0.0 807,261 + ABIE40_RS04065 0.50 -1.3 807,261 + ABIE40_RS04065 0.50 -2.3 807,300 + ABIE40_RS04065 0.52 -0.9 807,300 + ABIE40_RS04065 0.52 -2.9 807,301 - ABIE40_RS04065 0.52 -2.0 807,301 - ABIE40_RS04065 0.52 +1.3 807,375 + ABIE40_RS04065 0.57 -1.5 807,390 + ABIE40_RS04065 0.57 -2.1 807,390 + ABIE40_RS04065 0.57 -2.3 807,390 + ABIE40_RS04065 0.57 -2.0 807,391 - ABIE40_RS04065 0.57 +1.0 807,400 + ABIE40_RS04065 0.58 -2.6 807,444 + ABIE40_RS04065 0.61 -1.0 807,444 + ABIE40_RS04065 0.61 -3.9 807,444 + ABIE40_RS04065 0.61 -1.3 807,444 + ABIE40_RS04065 0.61 -4.3 807,445 - ABIE40_RS04065 0.61 -2.4 807,445 - ABIE40_RS04065 0.61 -0.9 807,477 + ABIE40_RS04065 0.63 -0.9 807,478 - ABIE40_RS04065 0.63 -0.8 807,478 - ABIE40_RS04065 0.63 -3.2 807,678 + ABIE40_RS04065 0.74 +0.1 807,678 + ABIE40_RS04065 0.74 -3.1 807,678 + ABIE40_RS04065 0.74 +0.7 807,678 + ABIE40_RS04065 0.74 -1.1 807,678 + ABIE40_RS04065 0.74 -0.9 807,678 + ABIE40_RS04065 0.74 -1.1 807,678 + ABIE40_RS04065 0.74 +0.4 807,678 + ABIE40_RS04065 0.74 -2.8 807,679 - ABIE40_RS04065 0.74 -1.5 807,679 - ABIE40_RS04065 0.74 -1.8 807,679 - ABIE40_RS04065 0.74 -1.5 807,681 + ABIE40_RS04065 0.75 -1.2 807,702 + ABIE40_RS04065 0.76 -1.3 807,702 + ABIE40_RS04065 0.76 -1.8 807,750 + ABIE40_RS04065 0.79 -1.5 807,751 - ABIE40_RS04065 0.79 -1.2 807,751 - ABIE40_RS04065 0.79 -0.7 807,774 + ABIE40_RS04065 0.80 +0.6 807,774 + ABIE40_RS04065 0.80 -2.6 807,780 + ABIE40_RS04065 0.80 -1.9 807,780 + ABIE40_RS04065 0.80 -3.0 807,780 + ABIE40_RS04065 0.80 -2.1 807,780 + ABIE40_RS04065 0.80 -0.4 807,780 + ABIE40_RS04065 0.80 +0.1 807,780 + ABIE40_RS04065 0.80 -4.0 807,780 + ABIE40_RS04065 0.80 -0.1 807,780 + ABIE40_RS04065 0.80 +1.1 807,780 + ABIE40_RS04065 0.80 -2.5 807,780 + ABIE40_RS04065 0.80 -1.6 807,781 - ABIE40_RS04065 0.80 -0.4 807,781 - ABIE40_RS04065 0.80 -0.2 807,886 - ABIE40_RS04065 0.87 -1.1 807,886 - ABIE40_RS04065 0.87 -2.6 807,894 + ABIE40_RS04065 0.87 -1.3 807,921 + ABIE40_RS04065 0.89 -1.8 807,921 + ABIE40_RS04065 0.89 -1.6 807,922 - ABIE40_RS04065 0.89 -1.1 807,922 - ABIE40_RS04065 0.89 -2.4 807,942 + ABIE40_RS04065 0.90 -0.8 807,942 + ABIE40_RS04065 0.90 -2.3 807,942 + ABIE40_RS04065 0.90 -0.5 807,942 + ABIE40_RS04065 0.90 -1.6 807,942 + ABIE40_RS04065 0.90 +0.0 807,975 + -1.1 807,975 + -3.0 807,975 + -1.8 808,078 - -1.8 808,078 - -2.3 808,110 + -1.3 808,110 + +0.2 808,110 + -1.1 808,110 + -0.5 808,110 + -0.6 808,110 + -1.6 808,110 + -1.1 808,111 - -0.6 808,111 - -2.7 808,258 + +0.3 808,258 + -0.5 808,259 - +1.7 808,259 - -2.2 808,336 - -3.0 808,494 + ABIE40_RS04070 0.24 -0.3 808,494 + ABIE40_RS04070 0.24 -2.4 808,674 + ABIE40_RS04070 0.43 -1.6 808,687 - ABIE40_RS04070 0.45 -2.7 808,688 + ABIE40_RS04070 0.45 -2.0 808,688 + ABIE40_RS04070 0.45 -0.0 808,688 + ABIE40_RS04070 0.45 +0.1 808,688 + ABIE40_RS04070 0.45 -2.8 808,688 + ABIE40_RS04070 0.45 -3.0 808,688 + ABIE40_RS04070 0.45 -2.6 808,689 - ABIE40_RS04070 0.45 -0.9 808,689 - ABIE40_RS04070 0.45 -0.8 808,878 + ABIE40_RS04070 0.65 +1.1 808,950 + ABIE40_RS04070 0.72 -0.6 809,050 + ABIE40_RS04070 0.83 -2.7 809,051 - ABIE40_RS04070 0.83 -2.1 809,051 - ABIE40_RS04070 0.83 -0.6 809,051 - ABIE40_RS04070 0.83 -2.5 809,137 - -1.1 809,137 - -2.6 809,207 + +0.1 809,208 - -1.5 809,208 - -3.6 809,312 + ABIE40_RS04075 0.70 -1.4 809,313 - ABIE40_RS04075 0.70 -0.2 809,313 - ABIE40_RS04075 0.70 -0.6 809,313 - ABIE40_RS04075 0.70 -0.9 809,324 + ABIE40_RS04075 0.78 -0.7 809,457 + ABIE40_RS04080 0.16 -3.3 809,457 + ABIE40_RS04080 0.16 -1.8 809,458 - ABIE40_RS04080 0.16 -2.3 809,458 - ABIE40_RS04080 0.16 -1.5 809,458 - ABIE40_RS04080 0.16 -0.7 809,742 + ABIE40_RS04080 0.63 -1.4 809,742 + ABIE40_RS04080 0.63 -2.5 809,743 - ABIE40_RS04080 0.63 -3.3 809,743 - ABIE40_RS04080 0.63 -0.6 809,823 + ABIE40_RS04080 0.76 -3.3 809,840 + ABIE40_RS04080 0.79 -2.3 809,886 + ABIE40_RS04080 0.87 -0.6 809,886 + ABIE40_RS04080 0.87 -1.6 809,887 - ABIE40_RS04080 0.87 -1.6 809,887 - ABIE40_RS04080 0.87 -0.9 809,887 - ABIE40_RS04080 0.87 -1.8 809,888 + ABIE40_RS04080 0.87 -1.8 809,888 + ABIE40_RS04080 0.87 -3.2 809,888 + ABIE40_RS04080 0.87 -3.3 809,888 + ABIE40_RS04080 0.87 -1.7 809,888 + ABIE40_RS04080 0.87 -1.6 809,888 + ABIE40_RS04080 0.87 -0.1 809,889 - ABIE40_RS04080 0.87 -1.7 809,889 - ABIE40_RS04080 0.87 -0.7 809,889 - ABIE40_RS04080 0.87 -3.5 809,889 - ABIE40_RS04080 0.87 -2.1 809,889 - ABIE40_RS04080 0.87 -1.6 809,889 - ABIE40_RS04080 0.87 +0.1 809,889 - ABIE40_RS04080 0.87 -2.2 809,889 - ABIE40_RS04080 0.87 +2.0 809,895 + ABIE40_RS04080 0.88 -1.4 810,020 + -1.1 810,021 - -1.6 810,021 - -3.4 810,021 - -2.2 810,021 - -2.6 810,021 - +0.2 810,055 + -2.8 810,055 + -1.4 810,055 + -2.4 810,056 - -1.6 810,056 - -2.4 810,056 - -1.5 810,060 + -0.3 810,060 + -1.0 810,060 + -2.8 810,060 + -2.4 810,060 + -1.6 810,060 + -1.8 810,060 + -1.6 810,060 + +1.0 810,061 - -1.2 810,061 - -2.2 810,061 - -1.9 810,133 + ABIE40_RS04085 0.12 -3.0 810,134 - ABIE40_RS04085 0.12 -0.9 810,134 - ABIE40_RS04085 0.12 -2.2 810,134 - ABIE40_RS04085 0.12 -3.5 810,134 - ABIE40_RS04085 0.12 -0.6 810,142 + ABIE40_RS04085 0.13 -1.0 810,143 - ABIE40_RS04085 0.13 -3.0
Or see this region's nucleotide sequence