Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02815

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02810 and ABIE40_RS02815 are separated by 187 nucleotidesABIE40_RS02815 and ABIE40_RS02820 are separated by 469 nucleotides ABIE40_RS02810: ABIE40_RS02810 - PAS domain S-box protein, at 554,218 to 556,365 _RS02810 ABIE40_RS02815: ABIE40_RS02815 - response regulator, at 556,553 to 556,921 _RS02815 ABIE40_RS02820: ABIE40_RS02820 - helix-turn-helix transcriptional regulator, at 557,391 to 558,095 _RS02820 Position (kb) 556 557Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 555.590 kb on + strand, within ABIE40_RS02810at 555.590 kb on + strand, within ABIE40_RS02810at 555.590 kb on + strand, within ABIE40_RS02810at 555.590 kb on + strand, within ABIE40_RS02810at 555.590 kb on + strand, within ABIE40_RS02810at 555.590 kb on + strand, within ABIE40_RS02810at 555.590 kb on + strand, within ABIE40_RS02810at 555.590 kb on + strand, within ABIE40_RS02810at 555.591 kb on - strand, within ABIE40_RS02810at 555.591 kb on - strand, within ABIE40_RS02810at 555.591 kb on - strand, within ABIE40_RS02810at 555.591 kb on - strand, within ABIE40_RS02810at 555.591 kb on - strand, within ABIE40_RS02810at 555.591 kb on - strand, within ABIE40_RS02810at 555.621 kb on + strand, within ABIE40_RS02810at 555.621 kb on + strand, within ABIE40_RS02810at 555.622 kb on - strand, within ABIE40_RS02810at 555.622 kb on - strand, within ABIE40_RS02810at 555.623 kb on + strand, within ABIE40_RS02810at 555.623 kb on + strand, within ABIE40_RS02810at 555.623 kb on + strand, within ABIE40_RS02810at 555.623 kb on + strand, within ABIE40_RS02810at 555.623 kb on + strand, within ABIE40_RS02810at 555.623 kb on + strand, within ABIE40_RS02810at 555.623 kb on + strand, within ABIE40_RS02810at 555.624 kb on - strand, within ABIE40_RS02810at 555.756 kb on + strand, within ABIE40_RS02810at 555.756 kb on + strand, within ABIE40_RS02810at 555.756 kb on + strand, within ABIE40_RS02810at 555.756 kb on + strand, within ABIE40_RS02810at 555.757 kb on - strand, within ABIE40_RS02810at 555.757 kb on - strand, within ABIE40_RS02810at 555.757 kb on - strand, within ABIE40_RS02810at 555.757 kb on - strand, within ABIE40_RS02810at 555.757 kb on - strand, within ABIE40_RS02810at 555.776 kb on + strand, within ABIE40_RS02810at 555.776 kb on + strand, within ABIE40_RS02810at 555.776 kb on + strand, within ABIE40_RS02810at 555.776 kb on - strand, within ABIE40_RS02810at 555.777 kb on - strand, within ABIE40_RS02810at 555.813 kb on + strand, within ABIE40_RS02810at 555.814 kb on - strand, within ABIE40_RS02810at 555.814 kb on - strand, within ABIE40_RS02810at 555.814 kb on - strand, within ABIE40_RS02810at 555.814 kb on - strand, within ABIE40_RS02810at 555.814 kb on - strand, within ABIE40_RS02810at 555.815 kb on + strand, within ABIE40_RS02810at 555.815 kb on + strand, within ABIE40_RS02810at 555.815 kb on + strand, within ABIE40_RS02810at 555.815 kb on + strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.816 kb on - strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.854 kb on + strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.855 kb on - strand, within ABIE40_RS02810at 555.948 kb on + strand, within ABIE40_RS02810at 555.948 kb on + strand, within ABIE40_RS02810at 555.949 kb on - strand, within ABIE40_RS02810at 555.949 kb on - strand, within ABIE40_RS02810at 556.413 kb on + strandat 556.414 kb on - strandat 556.449 kb on - strandat 556.483 kb on - strandat 556.492 kb on + strandat 556.492 kb on + strandat 556.493 kb on - strandat 556.493 kb on - strandat 556.496 kb on + strandat 556.496 kb on + strandat 556.496 kb on + strandat 556.496 kb on + strandat 556.496 kb on + strandat 556.496 kb on + strandat 556.497 kb on - strandat 556.497 kb on - strandat 556.497 kb on - strandat 556.497 kb on - strandat 556.553 kb on - strandat 556.553 kb on - strandat 556.553 kb on - strandat 556.553 kb on - strandat 556.563 kb on + strandat 556.564 kb on - strandat 556.569 kb on - strandat 556.607 kb on + strand, within ABIE40_RS02815at 556.607 kb on + strand, within ABIE40_RS02815at 556.607 kb on + strand, within ABIE40_RS02815at 556.608 kb on - strand, within ABIE40_RS02815at 556.736 kb on + strand, within ABIE40_RS02815at 556.736 kb on + strand, within ABIE40_RS02815at 556.736 kb on + strand, within ABIE40_RS02815at 556.736 kb on + strand, within ABIE40_RS02815at 556.736 kb on + strand, within ABIE40_RS02815at 556.736 kb on + strand, within ABIE40_RS02815at 556.737 kb on - strand, within ABIE40_RS02815at 556.737 kb on - strand, within ABIE40_RS02815at 556.738 kb on + strand, within ABIE40_RS02815at 556.738 kb on + strand, within ABIE40_RS02815at 556.738 kb on + strand, within ABIE40_RS02815at 556.738 kb on + strand, within ABIE40_RS02815at 556.739 kb on - strand, within ABIE40_RS02815at 557.002 kb on - strandat 557.086 kb on - strandat 557.099 kb on + strandat 557.099 kb on + strandat 557.100 kb on - strandat 557.139 kb on - strandat 557.172 kb on - strandat 557.175 kb on + strandat 557.176 kb on - strandat 557.243 kb on + strandat 557.256 kb on - strandat 557.276 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.327 kb on + strandat 557.328 kb on - strandat 557.328 kb on - strandat 557.328 kb on - strandat 557.330 kb on - strandat 557.378 kb on + strandat 557.378 kb on + strandat 557.379 kb on - strandat 557.379 kb on - strandat 557.420 kb on + strandat 557.420 kb on + strandat 557.420 kb on + strandat 557.420 kb on + strandat 557.474 kb on + strand, within ABIE40_RS02820at 557.475 kb on - strand, within ABIE40_RS02820at 557.475 kb on - strand, within ABIE40_RS02820at 557.494 kb on - strand, within ABIE40_RS02820at 557.494 kb on - strand, within ABIE40_RS02820at 557.698 kb on - strand, within ABIE40_RS02820at 557.779 kb on - strand, within ABIE40_RS02820at 557.779 kb on - strand, within ABIE40_RS02820at 557.871 kb on + strand, within ABIE40_RS02820at 557.871 kb on + strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820at 557.872 kb on - strand, within ABIE40_RS02820

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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555,590 + ABIE40_RS02810 0.64 +0.2
555,590 + ABIE40_RS02810 0.64 +1.0
555,590 + ABIE40_RS02810 0.64 +0.4
555,590 + ABIE40_RS02810 0.64 -0.2
555,590 + ABIE40_RS02810 0.64 +0.4
555,590 + ABIE40_RS02810 0.64 +1.6
555,590 + ABIE40_RS02810 0.64 +1.7
555,590 + ABIE40_RS02810 0.64 -3.1
555,591 - ABIE40_RS02810 0.64 +0.9
555,591 - ABIE40_RS02810 0.64 +1.7
555,591 - ABIE40_RS02810 0.64 +0.6
555,591 - ABIE40_RS02810 0.64 +0.7
555,591 - ABIE40_RS02810 0.64 +0.4
555,591 - ABIE40_RS02810 0.64 -0.9
555,621 + ABIE40_RS02810 0.65 +1.3
555,621 + ABIE40_RS02810 0.65 +1.1
555,622 - ABIE40_RS02810 0.65 +4.3
555,622 - ABIE40_RS02810 0.65 +0.2
555,623 + ABIE40_RS02810 0.65 -1.0
555,623 + ABIE40_RS02810 0.65 +0.5
555,623 + ABIE40_RS02810 0.65 +0.2
555,623 + ABIE40_RS02810 0.65 +0.9
555,623 + ABIE40_RS02810 0.65 +0.4
555,623 + ABIE40_RS02810 0.65 +0.6
555,623 + ABIE40_RS02810 0.65 +0.2
555,624 - ABIE40_RS02810 0.65 -1.2
555,756 + ABIE40_RS02810 0.72 +0.5
555,756 + ABIE40_RS02810 0.72 +0.3
555,756 + ABIE40_RS02810 0.72 -0.3
555,756 + ABIE40_RS02810 0.72 -0.6
555,757 - ABIE40_RS02810 0.72 +1.1
555,757 - ABIE40_RS02810 0.72 +1.0
555,757 - ABIE40_RS02810 0.72 -0.3
555,757 - ABIE40_RS02810 0.72 +1.1
555,757 - ABIE40_RS02810 0.72 -0.5
555,776 + ABIE40_RS02810 0.73 -0.7
555,776 + ABIE40_RS02810 0.73 -1.1
555,776 + ABIE40_RS02810 0.73 +0.4
555,776 - ABIE40_RS02810 0.73 +2.1
555,777 - ABIE40_RS02810 0.73 +0.8
555,813 + ABIE40_RS02810 0.74 +0.3
555,814 - ABIE40_RS02810 0.74 +0.6
555,814 - ABIE40_RS02810 0.74 +0.5
555,814 - ABIE40_RS02810 0.74 -2.5
555,814 - ABIE40_RS02810 0.74 -0.2
555,814 - ABIE40_RS02810 0.74 +0.9
555,815 + ABIE40_RS02810 0.74 -0.2
555,815 + ABIE40_RS02810 0.74 +2.7
555,815 + ABIE40_RS02810 0.74 -1.0
555,815 + ABIE40_RS02810 0.74 +0.9
555,816 - ABIE40_RS02810 0.74 +0.5
555,816 - ABIE40_RS02810 0.74 +0.7
555,816 - ABIE40_RS02810 0.74 -0.5
555,816 - ABIE40_RS02810 0.74 -0.5
555,816 - ABIE40_RS02810 0.74 +0.5
555,816 - ABIE40_RS02810 0.74 +0.6
555,816 - ABIE40_RS02810 0.74 +0.4
555,816 - ABIE40_RS02810 0.74 +1.1
555,854 + ABIE40_RS02810 0.76 +0.1
555,854 + ABIE40_RS02810 0.76 +0.1
555,854 + ABIE40_RS02810 0.76 +0.6
555,854 + ABIE40_RS02810 0.76 -0.4
555,854 + ABIE40_RS02810 0.76 +0.9
555,854 + ABIE40_RS02810 0.76 +1.4
555,854 + ABIE40_RS02810 0.76 +1.5
555,854 + ABIE40_RS02810 0.76 +1.3
555,854 + ABIE40_RS02810 0.76 -1.2
555,855 - ABIE40_RS02810 0.76 -0.2
555,855 - ABIE40_RS02810 0.76 +0.0
555,855 - ABIE40_RS02810 0.76 +0.7
555,855 - ABIE40_RS02810 0.76 +0.1
555,855 - ABIE40_RS02810 0.76 -2.3
555,855 - ABIE40_RS02810 0.76 +1.2
555,855 - ABIE40_RS02810 0.76 +1.5
555,855 - ABIE40_RS02810 0.76 +0.4
555,948 + ABIE40_RS02810 0.81 +0.1
555,948 + ABIE40_RS02810 0.81 +2.6
555,949 - ABIE40_RS02810 0.81 -0.8
555,949 - ABIE40_RS02810 0.81 -0.2
556,413 + +0.1
556,414 - -1.1
556,449 - -1.8
556,483 - +0.6
556,492 + +0.1
556,492 + +1.5
556,493 - +0.4
556,493 - +1.2
556,496 + -0.0
556,496 + +2.1
556,496 + +0.5
556,496 + -0.9
556,496 + +1.7
556,496 + +1.1
556,497 - -0.1
556,497 - +0.7
556,497 - +1.5
556,497 - -0.7
556,553 - +0.1
556,553 - -1.4
556,553 - +0.1
556,553 - -0.0
556,563 + +0.3
556,564 - -1.1
556,569 - +0.0
556,607 + ABIE40_RS02815 0.15 +1.1
556,607 + ABIE40_RS02815 0.15 +2.0
556,607 + ABIE40_RS02815 0.15 +0.8
556,608 - ABIE40_RS02815 0.15 +1.1
556,736 + ABIE40_RS02815 0.50 +0.4
556,736 + ABIE40_RS02815 0.50 +0.1
556,736 + ABIE40_RS02815 0.50 +0.2
556,736 + ABIE40_RS02815 0.50 -1.8
556,736 + ABIE40_RS02815 0.50 +0.7
556,736 + ABIE40_RS02815 0.50 +2.3
556,737 - ABIE40_RS02815 0.50 -0.3
556,737 - ABIE40_RS02815 0.50 -0.1
556,738 + ABIE40_RS02815 0.50 +0.7
556,738 + ABIE40_RS02815 0.50 +0.6
556,738 + ABIE40_RS02815 0.50 -1.0
556,738 + ABIE40_RS02815 0.50 +0.8
556,739 - ABIE40_RS02815 0.50 -0.1
557,002 - +1.4
557,086 - -0.0
557,099 + -1.5
557,099 + -2.8
557,100 - -1.1
557,139 - -1.3
557,172 - -0.7
557,175 + -0.8
557,176 - +0.1
557,243 + -1.8
557,256 - -0.1
557,276 + +0.4
557,327 + +0.7
557,327 + +0.0
557,327 + +0.4
557,327 + +1.2
557,327 + -1.5
557,328 - -0.6
557,328 - +0.2
557,328 - -0.8
557,330 - -2.1
557,378 + -0.1
557,378 + +0.2
557,379 - +0.3
557,379 - -1.1
557,420 + -0.3
557,420 + -0.6
557,420 + -0.2
557,420 + +0.5
557,474 + ABIE40_RS02820 0.12 -0.3
557,475 - ABIE40_RS02820 0.12 -0.8
557,475 - ABIE40_RS02820 0.12 -0.4
557,494 - ABIE40_RS02820 0.15 -0.2
557,494 - ABIE40_RS02820 0.15 -0.5
557,698 - ABIE40_RS02820 0.44 -2.0
557,779 - ABIE40_RS02820 0.55 -0.1
557,779 - ABIE40_RS02820 0.55 -0.6
557,871 + ABIE40_RS02820 0.68 -0.8
557,871 + ABIE40_RS02820 0.68 +0.2
557,872 - ABIE40_RS02820 0.68 +0.1
557,872 - ABIE40_RS02820 0.68 -0.7
557,872 - ABIE40_RS02820 0.68 -0.7
557,872 - ABIE40_RS02820 0.68 +1.5
557,872 - ABIE40_RS02820 0.68 -1.8
557,872 - ABIE40_RS02820 0.68 -0.6
557,872 - ABIE40_RS02820 0.68 -0.4

Or see this region's nucleotide sequence