Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00570

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS00560 and ABIE40_RS00565 are separated by 3 nucleotidesABIE40_RS00565 and ABIE40_RS00570 overlap by 1 nucleotidesABIE40_RS00570 and ABIE40_RS00575 are separated by 100 nucleotidesABIE40_RS00575 and ABIE40_RS00580 are separated by 45 nucleotides ABIE40_RS00560: ABIE40_RS00560 - carbon-phosphorus lyase complex subunit PhnI, at 115,997 to 117,103 _RS00560 ABIE40_RS00565: ABIE40_RS00565 - phosphonate C-P lyase system protein PhnH, at 117,107 to 117,715 _RS00565 ABIE40_RS00570: ABIE40_RS00570 - phosphonate C-P lyase system protein PhnG, at 117,715 to 118,179 _RS00570 ABIE40_RS00575: ABIE40_RS00575 - phosphonate metabolism transcriptional regulator PhnF, at 118,280 to 119,017 _RS00575 ABIE40_RS00580: ABIE40_RS00580 - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase, at 119,063 to 119,698 _RS00580 Position (kb) 117 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.731 kb on + strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.732 kb on - strand, within ABIE40_RS00560at 116.733 kb on + strand, within ABIE40_RS00560at 116.733 kb on + strand, within ABIE40_RS00560at 116.733 kb on + strand, within ABIE40_RS00560at 116.734 kb on - strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.778 kb on + strand, within ABIE40_RS00560at 116.779 kb on - strand, within ABIE40_RS00560at 116.779 kb on - strand, within ABIE40_RS00560at 116.779 kb on - strand, within ABIE40_RS00560at 116.791 kb on + strand, within ABIE40_RS00560at 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.099 kb on + strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.100 kb on - strandat 117.275 kb on - strand, within ABIE40_RS00565at 117.354 kb on + strand, within ABIE40_RS00565at 117.460 kb on + strand, within ABIE40_RS00565at 117.516 kb on - strand, within ABIE40_RS00565at 117.516 kb on - strand, within ABIE40_RS00565at 117.697 kb on + strandat 117.697 kb on + strandat 117.698 kb on - strandat 117.698 kb on - strandat 118.122 kb on + strand, within ABIE40_RS00570at 118.232 kb on + strandat 118.232 kb on + strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.233 kb on - strandat 118.238 kb on + strandat 118.238 kb on + strandat 118.335 kb on + strandat 118.438 kb on + strand, within ABIE40_RS00575at 118.438 kb on + strand, within ABIE40_RS00575at 118.775 kb on + strand, within ABIE40_RS00575at 118.776 kb on - strand, within ABIE40_RS00575at 118.776 kb on - strand, within ABIE40_RS00575at 118.829 kb on + strand, within ABIE40_RS00575at 118.829 kb on + strand, within ABIE40_RS00575at 118.829 kb on + strand, within ABIE40_RS00575at 118.829 kb on + strand, within ABIE40_RS00575at 118.829 kb on + strand, within ABIE40_RS00575at 118.829 kb on + strand, within ABIE40_RS00575at 118.830 kb on - strand, within ABIE40_RS00575at 118.830 kb on - strand, within ABIE40_RS00575at 118.830 kb on - strand, within ABIE40_RS00575at 118.964 kb on + strandat 118.964 kb on + strandat 118.964 kb on + strandat 118.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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116,731 + ABIE40_RS00560 0.66 +0.6
116,731 + ABIE40_RS00560 0.66 -0.6
116,731 + ABIE40_RS00560 0.66 +0.4
116,731 + ABIE40_RS00560 0.66 +0.1
116,731 + ABIE40_RS00560 0.66 -1.6
116,731 + ABIE40_RS00560 0.66 -0.4
116,731 + ABIE40_RS00560 0.66 +1.5
116,731 + ABIE40_RS00560 0.66 -0.2
116,731 + ABIE40_RS00560 0.66 +3.3
116,732 - ABIE40_RS00560 0.66 -1.1
116,732 - ABIE40_RS00560 0.66 -0.2
116,732 - ABIE40_RS00560 0.66 +0.1
116,732 - ABIE40_RS00560 0.66 -0.7
116,732 - ABIE40_RS00560 0.66 -2.1
116,732 - ABIE40_RS00560 0.66 -0.3
116,732 - ABIE40_RS00560 0.66 -0.8
116,732 - ABIE40_RS00560 0.66 -0.2
116,732 - ABIE40_RS00560 0.66 -0.1
116,733 + ABIE40_RS00560 0.66 -0.9
116,733 + ABIE40_RS00560 0.66 +0.6
116,733 + ABIE40_RS00560 0.66 +0.7
116,734 - ABIE40_RS00560 0.67 -0.5
116,778 + ABIE40_RS00560 0.71 +1.2
116,778 + ABIE40_RS00560 0.71 +0.6
116,778 + ABIE40_RS00560 0.71 +1.1
116,778 + ABIE40_RS00560 0.71 +0.4
116,778 + ABIE40_RS00560 0.71 -0.1
116,778 + ABIE40_RS00560 0.71 +0.2
116,778 + ABIE40_RS00560 0.71 -0.7
116,778 + ABIE40_RS00560 0.71 +1.0
116,778 + ABIE40_RS00560 0.71 -0.7
116,779 - ABIE40_RS00560 0.71 -0.5
116,779 - ABIE40_RS00560 0.71 -0.6
116,779 - ABIE40_RS00560 0.71 -0.7
116,791 + ABIE40_RS00560 0.72 +0.3
117,099 + +0.2
117,099 + -0.1
117,099 + -1.6
117,099 + +0.8
117,099 + -0.4
117,099 + -2.3
117,099 + -0.7
117,099 + -3.3
117,099 + -0.0
117,099 + +0.0
117,099 + -1.9
117,099 + -0.8
117,099 + -0.5
117,099 + -0.3
117,099 + -0.3
117,099 + -0.5
117,099 + -1.7
117,099 + +0.2
117,100 - +0.4
117,100 - -2.3
117,100 - +1.9
117,100 - +0.4
117,100 - -1.9
117,100 - -1.2
117,100 - +0.7
117,100 - -0.3
117,100 - -0.4
117,100 - -0.2
117,100 - +0.1
117,100 - -0.7
117,100 - -0.3
117,100 - +0.8
117,275 - ABIE40_RS00565 0.28 -1.5
117,354 + ABIE40_RS00565 0.41 +0.9
117,460 + ABIE40_RS00565 0.58 +0.2
117,516 - ABIE40_RS00565 0.67 +0.9
117,516 - ABIE40_RS00565 0.67 -0.4
117,697 + +0.6
117,697 + +0.7
117,698 - -0.7
117,698 - -0.1
118,122 + ABIE40_RS00570 0.88 -0.4
118,232 + -0.2
118,232 + -0.7
118,233 - -0.9
118,233 - -0.3
118,233 - -0.5
118,233 - +2.1
118,233 - +0.9
118,233 - +0.3
118,233 - +0.2
118,233 - +0.2
118,233 - -0.6
118,238 + -0.4
118,238 + -1.5
118,335 + -1.0
118,438 + ABIE40_RS00575 0.21 -0.9
118,438 + ABIE40_RS00575 0.21 -0.9
118,775 + ABIE40_RS00575 0.67 +0.3
118,776 - ABIE40_RS00575 0.67 -1.0
118,776 - ABIE40_RS00575 0.67 -1.8
118,829 + ABIE40_RS00575 0.74 -1.2
118,829 + ABIE40_RS00575 0.74 +0.8
118,829 + ABIE40_RS00575 0.74 -0.9
118,829 + ABIE40_RS00575 0.74 +0.3
118,829 + ABIE40_RS00575 0.74 -1.6
118,829 + ABIE40_RS00575 0.74 -1.3
118,830 - ABIE40_RS00575 0.75 -0.2
118,830 - ABIE40_RS00575 0.75 -0.2
118,830 - ABIE40_RS00575 0.75 -0.7
118,964 + +1.0
118,964 + -1.3
118,964 + +0.1
118,964 + +1.5

Or see this region's nucleotide sequence