Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS19990 and ABID97_RS19995 are separated by 139 nucleotides ABID97_RS19995 and ABID97_RS20000 are separated by 50 nucleotides
ABID97_RS19990: ABID97_RS19990 - DNA internalization-related competence protein ComEC/Rec2, at 4,127,895 to 4,130,372
_RS19990
ABID97_RS19995: ABID97_RS19995 - transglutaminase family protein, at 4,130,512 to 4,134,057
_RS19995
ABID97_RS20000: ABID97_RS20000 - circularly permuted type 2 ATP-grasp protein, at 4,134,108 to 4,136,861
_RS20000
Position (kb) 4130
4131
4132
4133
4134
4135 Strain fitness (log2 ratio) -1
0
1 at 4130.077 kb on + strand, within ABID97_RS19990 at 4130.496 kb on - strand at 4130.695 kb on + strand at 4130.774 kb on - strand at 4130.827 kb on + strand at 4130.828 kb on - strand at 4130.899 kb on + strand, within ABID97_RS19995 at 4130.899 kb on + strand, within ABID97_RS19995 at 4130.983 kb on + strand, within ABID97_RS19995 at 4130.983 kb on + strand, within ABID97_RS19995 at 4130.983 kb on + strand, within ABID97_RS19995 at 4130.984 kb on - strand, within ABID97_RS19995 at 4131.386 kb on - strand, within ABID97_RS19995 at 4131.413 kb on - strand, within ABID97_RS19995 at 4131.514 kb on + strand, within ABID97_RS19995 at 4131.514 kb on + strand, within ABID97_RS19995 at 4131.515 kb on - strand, within ABID97_RS19995 at 4131.583 kb on + strand, within ABID97_RS19995 at 4131.772 kb on + strand, within ABID97_RS19995 at 4131.773 kb on - strand, within ABID97_RS19995 at 4131.773 kb on - strand, within ABID97_RS19995 at 4131.853 kb on + strand, within ABID97_RS19995 at 4131.865 kb on + strand, within ABID97_RS19995 at 4131.866 kb on - strand, within ABID97_RS19995 at 4131.869 kb on - strand, within ABID97_RS19995 at 4131.869 kb on - strand, within ABID97_RS19995 at 4131.869 kb on - strand, within ABID97_RS19995 at 4131.869 kb on - strand, within ABID97_RS19995 at 4131.871 kb on + strand, within ABID97_RS19995 at 4131.872 kb on - strand, within ABID97_RS19995 at 4131.872 kb on - strand, within ABID97_RS19995 at 4132.177 kb on + strand, within ABID97_RS19995 at 4132.612 kb on + strand, within ABID97_RS19995 at 4132.804 kb on + strand, within ABID97_RS19995 at 4132.804 kb on + strand, within ABID97_RS19995 at 4132.805 kb on - strand, within ABID97_RS19995 at 4132.805 kb on - strand, within ABID97_RS19995 at 4132.963 kb on + strand, within ABID97_RS19995 at 4132.990 kb on + strand, within ABID97_RS19995 at 4132.990 kb on + strand, within ABID97_RS19995 at 4132.990 kb on + strand, within ABID97_RS19995 at 4133.065 kb on + strand, within ABID97_RS19995 at 4133.066 kb on - strand, within ABID97_RS19995 at 4133.218 kb on + strand, within ABID97_RS19995 at 4133.353 kb on + strand, within ABID97_RS19995 at 4133.354 kb on - strand, within ABID97_RS19995 at 4133.758 kb on + strand at 4133.869 kb on + strand at 4133.900 kb on - strand at 4133.970 kb on + strand at 4134.522 kb on + strand, within ABID97_RS20000 at 4134.522 kb on + strand, within ABID97_RS20000 at 4134.522 kb on + strand, within ABID97_RS20000 at 4134.522 kb on + strand, within ABID97_RS20000 at 4134.523 kb on - strand, within ABID97_RS20000 at 4134.523 kb on - strand, within ABID97_RS20000 at 4134.531 kb on + strand, within ABID97_RS20000 at 4134.532 kb on - strand, within ABID97_RS20000 at 4134.669 kb on + strand, within ABID97_RS20000 at 4134.955 kb on - strand, within ABID97_RS20000 at 4135.047 kb on + strand, within ABID97_RS20000 at 4135.047 kb on + strand, within ABID97_RS20000
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 4,130,077 + ABID97_RS19990 0.88 +0.1 4,130,496 - -0.5 4,130,695 + -0.4 4,130,774 - +0.7 4,130,827 + +0.2 4,130,828 - +0.2 4,130,899 + ABID97_RS19995 0.11 -0.2 4,130,899 + ABID97_RS19995 0.11 -1.4 4,130,983 + ABID97_RS19995 0.13 +1.1 4,130,983 + ABID97_RS19995 0.13 +0.1 4,130,983 + ABID97_RS19995 0.13 +0.2 4,130,984 - ABID97_RS19995 0.13 -0.2 4,131,386 - ABID97_RS19995 0.25 +0.5 4,131,413 - ABID97_RS19995 0.25 -0.9 4,131,514 + ABID97_RS19995 0.28 -0.2 4,131,514 + ABID97_RS19995 0.28 -0.3 4,131,515 - ABID97_RS19995 0.28 +1.4 4,131,583 + ABID97_RS19995 0.30 -0.3 4,131,772 + ABID97_RS19995 0.36 +0.4 4,131,773 - ABID97_RS19995 0.36 -0.2 4,131,773 - ABID97_RS19995 0.36 +0.7 4,131,853 + ABID97_RS19995 0.38 -0.0 4,131,865 + ABID97_RS19995 0.38 -0.1 4,131,866 - ABID97_RS19995 0.38 +0.2 4,131,869 - ABID97_RS19995 0.38 -0.9 4,131,869 - ABID97_RS19995 0.38 +0.2 4,131,869 - ABID97_RS19995 0.38 -0.0 4,131,869 - ABID97_RS19995 0.38 +0.1 4,131,871 + ABID97_RS19995 0.38 -0.5 4,131,872 - ABID97_RS19995 0.38 +1.4 4,131,872 - ABID97_RS19995 0.38 +0.4 4,132,177 + ABID97_RS19995 0.47 +0.1 4,132,612 + ABID97_RS19995 0.59 -0.2 4,132,804 + ABID97_RS19995 0.65 -0.1 4,132,804 + ABID97_RS19995 0.65 +0.2 4,132,805 - ABID97_RS19995 0.65 -0.2 4,132,805 - ABID97_RS19995 0.65 -0.2 4,132,963 + ABID97_RS19995 0.69 +0.1 4,132,990 + ABID97_RS19995 0.70 -0.6 4,132,990 + ABID97_RS19995 0.70 -0.6 4,132,990 + ABID97_RS19995 0.70 -0.0 4,133,065 + ABID97_RS19995 0.72 +0.2 4,133,066 - ABID97_RS19995 0.72 -0.5 4,133,218 + ABID97_RS19995 0.76 +1.2 4,133,353 + ABID97_RS19995 0.80 -0.2 4,133,354 - ABID97_RS19995 0.80 -0.1 4,133,758 + -0.5 4,133,869 + +0.7 4,133,900 - -0.4 4,133,970 + +0.4 4,134,522 + ABID97_RS20000 0.15 -0.7 4,134,522 + ABID97_RS20000 0.15 +0.1 4,134,522 + ABID97_RS20000 0.15 -0.1 4,134,522 + ABID97_RS20000 0.15 +1.2 4,134,523 - ABID97_RS20000 0.15 +0.0 4,134,523 - ABID97_RS20000 0.15 +0.1 4,134,531 + ABID97_RS20000 0.15 -0.7 4,134,532 - ABID97_RS20000 0.15 -0.3 4,134,669 + ABID97_RS20000 0.20 +0.4 4,134,955 - ABID97_RS20000 0.31 +0.9 4,135,047 + ABID97_RS20000 0.34 -1.1 4,135,047 + ABID97_RS20000 0.34 -0.6
Or see this region's nucleotide sequence