Strain Fitness in Variovorax sp. OAS795 around ABID97_RS10175

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS10170 and ABID97_RS10175 are separated by 35 nucleotidesABID97_RS10175 and ABID97_RS10180 are separated by 4 nucleotides ABID97_RS10170: ABID97_RS10170 - efflux transporter outer membrane subunit, at 2,110,455 to 2,111,903 _RS10170 ABID97_RS10175: ABID97_RS10175 - efflux RND transporter periplasmic adaptor subunit, at 2,111,939 to 2,113,195 _RS10175 ABID97_RS10180: ABID97_RS10180 - efflux RND transporter permease subunit, at 2,113,200 to 2,116,418 _RS10180 Position (kb) 2111 2112 2113 2114Strain fitness (log2 ratio) -1 0 1at 2110.997 kb on - strand, within ABID97_RS10170at 2111.389 kb on + strand, within ABID97_RS10170at 2111.390 kb on - strand, within ABID97_RS10170at 2111.390 kb on - strand, within ABID97_RS10170at 2111.512 kb on + strand, within ABID97_RS10170at 2111.572 kb on + strand, within ABID97_RS10170at 2111.572 kb on + strand, within ABID97_RS10170at 2111.572 kb on + strand, within ABID97_RS10170at 2111.573 kb on - strand, within ABID97_RS10170at 2111.573 kb on - strand, within ABID97_RS10170at 2111.869 kb on + strandat 2111.870 kb on - strandat 2111.870 kb on - strandat 2112.243 kb on + strand, within ABID97_RS10175at 2112.243 kb on + strand, within ABID97_RS10175at 2112.243 kb on + strand, within ABID97_RS10175at 2112.244 kb on - strand, within ABID97_RS10175at 2112.417 kb on + strand, within ABID97_RS10175at 2112.418 kb on - strand, within ABID97_RS10175at 2112.418 kb on - strand, within ABID97_RS10175at 2112.438 kb on + strand, within ABID97_RS10175at 2112.439 kb on - strand, within ABID97_RS10175at 2112.439 kb on - strand, within ABID97_RS10175at 2112.439 kb on - strand, within ABID97_RS10175at 2112.470 kb on - strand, within ABID97_RS10175at 2112.870 kb on + strand, within ABID97_RS10175at 2113.720 kb on + strand, within ABID97_RS10180at 2113.900 kb on + strand, within ABID97_RS10180at 2113.900 kb on + strand, within ABID97_RS10180at 2113.901 kb on - strand, within ABID97_RS10180at 2114.069 kb on - strand, within ABID97_RS10180at 2114.069 kb on - strand, within ABID97_RS10180at 2114.069 kb on - strand, within ABID97_RS10180

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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2,110,997 - ABID97_RS10170 0.37 -0.1
2,111,389 + ABID97_RS10170 0.64 -1.5
2,111,390 - ABID97_RS10170 0.65 +0.9
2,111,390 - ABID97_RS10170 0.65 +0.4
2,111,512 + ABID97_RS10170 0.73 +0.5
2,111,572 + ABID97_RS10170 0.77 +0.4
2,111,572 + ABID97_RS10170 0.77 -0.1
2,111,572 + ABID97_RS10170 0.77 -0.1
2,111,573 - ABID97_RS10170 0.77 +0.6
2,111,573 - ABID97_RS10170 0.77 +0.0
2,111,869 + -0.3
2,111,870 - +0.8
2,111,870 - -0.5
2,112,243 + ABID97_RS10175 0.24 +0.5
2,112,243 + ABID97_RS10175 0.24 +0.4
2,112,243 + ABID97_RS10175 0.24 -0.4
2,112,244 - ABID97_RS10175 0.24 +1.1
2,112,417 + ABID97_RS10175 0.38 +1.0
2,112,418 - ABID97_RS10175 0.38 +0.7
2,112,418 - ABID97_RS10175 0.38 +0.4
2,112,438 + ABID97_RS10175 0.40 +0.6
2,112,439 - ABID97_RS10175 0.40 -0.1
2,112,439 - ABID97_RS10175 0.40 -0.7
2,112,439 - ABID97_RS10175 0.40 -0.4
2,112,470 - ABID97_RS10175 0.42 +0.3
2,112,870 + ABID97_RS10175 0.74 +1.6
2,113,720 + ABID97_RS10180 0.16 +1.7
2,113,900 + ABID97_RS10180 0.22 +0.8
2,113,900 + ABID97_RS10180 0.22 +0.3
2,113,901 - ABID97_RS10180 0.22 -0.0
2,114,069 - ABID97_RS10180 0.27 +0.1
2,114,069 - ABID97_RS10180 0.27 +0.0
2,114,069 - ABID97_RS10180 0.27 -0.1

Or see this region's nucleotide sequence