Strain Fitness in Variovorax sp. OAS795 around ABID97_RS09145

Experiment: L-Tryptophan (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS09140 and ABID97_RS09145 are separated by 351 nucleotidesABID97_RS09145 and ABID97_RS09150 are separated by 57 nucleotides ABID97_RS09140: ABID97_RS09140 - GMP reductase, at 1,917,231 to 1,918,208 _RS09140 ABID97_RS09145: ABID97_RS09145 - azurin, at 1,918,560 to 1,919,012 _RS09145 ABID97_RS09150: ABID97_RS09150 - UvrD-helicase domain-containing protein, at 1,919,070 to 1,921,502 _RS09150 Position (kb) 1918 1919 1920Strain fitness (log2 ratio) -2 -1 0 1at 1917.817 kb on + strand, within ABID97_RS09140at 1917.874 kb on + strand, within ABID97_RS09140at 1917.920 kb on - strand, within ABID97_RS09140at 1918.021 kb on + strand, within ABID97_RS09140at 1918.021 kb on + strand, within ABID97_RS09140at 1918.021 kb on + strand, within ABID97_RS09140at 1918.021 kb on + strand, within ABID97_RS09140at 1918.022 kb on - strand, within ABID97_RS09140at 1918.022 kb on - strand, within ABID97_RS09140at 1918.022 kb on - strand, within ABID97_RS09140at 1918.022 kb on - strand, within ABID97_RS09140at 1918.022 kb on - strand, within ABID97_RS09140at 1918.022 kb on - strand, within ABID97_RS09140at 1918.024 kb on - strand, within ABID97_RS09140at 1918.027 kb on + strand, within ABID97_RS09140at 1918.192 kb on + strandat 1918.303 kb on - strandat 1918.344 kb on + strandat 1918.344 kb on + strandat 1918.345 kb on - strandat 1918.345 kb on - strandat 1918.345 kb on - strandat 1918.347 kb on - strandat 1918.383 kb on - strandat 1918.383 kb on - strandat 1918.384 kb on + strandat 1918.384 kb on + strandat 1918.384 kb on + strandat 1918.385 kb on - strandat 1918.385 kb on - strandat 1918.385 kb on - strandat 1918.836 kb on + strand, within ABID97_RS09145at 1918.837 kb on - strand, within ABID97_RS09145at 1918.944 kb on + strand, within ABID97_RS09145at 1918.944 kb on + strand, within ABID97_RS09145at 1918.945 kb on - strand, within ABID97_RS09145at 1918.945 kb on - strand, within ABID97_RS09145at 1918.945 kb on - strand, within ABID97_RS09145at 1918.945 kb on - strand, within ABID97_RS09145at 1918.945 kb on - strand, within ABID97_RS09145at 1918.945 kb on - strand, within ABID97_RS09145at 1918.945 kb on - strand, within ABID97_RS09145at 1919.059 kb on - strandat 1919.059 kb on - strandat 1919.638 kb on - strand, within ABID97_RS09150at 1919.638 kb on - strand, within ABID97_RS09150at 1919.647 kb on - strand, within ABID97_RS09150at 1919.905 kb on - strand, within ABID97_RS09150at 1920.000 kb on + strand, within ABID97_RS09150at 1920.000 kb on + strand, within ABID97_RS09150

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Tryptophan (C)
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1,917,817 + ABID97_RS09140 0.60 -0.0
1,917,874 + ABID97_RS09140 0.66 -1.5
1,917,920 - ABID97_RS09140 0.70 -0.1
1,918,021 + ABID97_RS09140 0.81 +0.3
1,918,021 + ABID97_RS09140 0.81 -0.4
1,918,021 + ABID97_RS09140 0.81 -0.2
1,918,021 + ABID97_RS09140 0.81 -0.4
1,918,022 - ABID97_RS09140 0.81 -0.2
1,918,022 - ABID97_RS09140 0.81 +0.4
1,918,022 - ABID97_RS09140 0.81 -0.3
1,918,022 - ABID97_RS09140 0.81 -0.0
1,918,022 - ABID97_RS09140 0.81 -0.4
1,918,022 - ABID97_RS09140 0.81 -0.4
1,918,024 - ABID97_RS09140 0.81 -0.3
1,918,027 + ABID97_RS09140 0.81 -0.1
1,918,192 + -0.3
1,918,303 - +0.2
1,918,344 + -0.0
1,918,344 + -0.3
1,918,345 - -0.5
1,918,345 - -1.1
1,918,345 - -0.1
1,918,347 - -0.1
1,918,383 - +0.2
1,918,383 - -0.2
1,918,384 + -0.4
1,918,384 + +0.0
1,918,384 + +1.3
1,918,385 - -0.1
1,918,385 - +1.0
1,918,385 - -0.5
1,918,836 + ABID97_RS09145 0.61 +0.5
1,918,837 - ABID97_RS09145 0.61 -0.2
1,918,944 + ABID97_RS09145 0.85 +0.2
1,918,944 + ABID97_RS09145 0.85 +0.5
1,918,945 - ABID97_RS09145 0.85 -0.1
1,918,945 - ABID97_RS09145 0.85 -0.2
1,918,945 - ABID97_RS09145 0.85 -0.0
1,918,945 - ABID97_RS09145 0.85 +0.5
1,918,945 - ABID97_RS09145 0.85 -0.2
1,918,945 - ABID97_RS09145 0.85 -0.0
1,918,945 - ABID97_RS09145 0.85 -0.5
1,919,059 - -0.1
1,919,059 - +0.2
1,919,638 - ABID97_RS09150 0.23 -1.3
1,919,638 - ABID97_RS09150 0.23 -2.5
1,919,647 - ABID97_RS09150 0.24 -0.6
1,919,905 - ABID97_RS09150 0.34 -2.4
1,920,000 + ABID97_RS09150 0.38 -0.0
1,920,000 + ABID97_RS09150 0.38 -1.0

Or see this region's nucleotide sequence