Strain Fitness in Escherichia coli BW25113 around b4067

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjcF and actP are separated by 177 nucleotidesactP and yjcH overlap by 4 nucleotidesyjcH and acs are separated by 199 nucleotides b4066: yjcF - hypothetical protein (NCBI), at 4,279,806 to 4,281,098 yjcF b4067: actP - acetate permease (NCBI), at 4,281,276 to 4,282,925 actP b4068: yjcH - required for glycolate transport, with actP (from data), at 4,282,922 to 4,283,236 yjcH b4069: acs - acetyl-coenzyme A synthetase (NCBI), at 4,283,436 to 4,285,394 acs Position (kb) 4281 4282 4283Strain fitness (log2 ratio) -3 -2 -1 0 1at 4281.018 kb on + strandat 4281.018 kb on + strandat 4281.024 kb on - strandat 4281.027 kb on + strandat 4281.046 kb on + strandat 4281.138 kb on - strandat 4281.223 kb on + strandat 4281.230 kb on - strandat 4281.230 kb on - strandat 4281.232 kb on - strandat 4281.243 kb on - strandat 4281.252 kb on - strandat 4281.252 kb on - strandat 4281.252 kb on - strandat 4281.255 kb on - strandat 4281.262 kb on + strandat 4281.262 kb on + strandat 4281.262 kb on + strandat 4281.267 kb on - strandat 4281.270 kb on - strandat 4281.281 kb on - strandat 4281.281 kb on - strandat 4281.282 kb on - strandat 4281.296 kb on - strandat 4281.296 kb on - strandat 4281.296 kb on - strandat 4281.296 kb on - strandat 4281.307 kb on - strandat 4281.308 kb on - strandat 4281.308 kb on - strandat 4281.318 kb on - strandat 4281.321 kb on + strandat 4281.334 kb on - strandat 4281.334 kb on - strandat 4281.341 kb on + strandat 4281.349 kb on - strandat 4281.349 kb on - strandat 4281.349 kb on - strandat 4281.349 kb on - strandat 4281.349 kb on - strandat 4281.349 kb on - strandat 4281.412 kb on + strandat 4281.420 kb on - strandat 4281.420 kb on - strandat 4281.503 kb on + strand, within actPat 4281.503 kb on + strand, within actPat 4281.506 kb on - strand, within actPat 4281.573 kb on - strand, within actPat 4281.573 kb on - strand, within actPat 4281.578 kb on - strand, within actPat 4281.756 kb on - strand, within actPat 4281.927 kb on - strand, within actPat 4281.934 kb on + strand, within actPat 4282.003 kb on - strand, within actPat 4282.033 kb on - strand, within actPat 4282.072 kb on - strand, within actPat 4282.094 kb on - strand, within actPat 4282.191 kb on - strand, within actPat 4282.191 kb on - strand, within actPat 4282.215 kb on - strand, within actPat 4282.215 kb on - strand, within actPat 4282.412 kb on - strand, within actPat 4282.531 kb on + strand, within actPat 4282.706 kb on - strand, within actPat 4282.718 kb on - strand, within actPat 4282.718 kb on - strand, within actPat 4282.738 kb on - strand, within actPat 4282.738 kb on - strand, within actPat 4282.740 kb on - strand, within actPat 4282.842 kb on + strandat 4282.864 kb on - strandat 4282.873 kb on - strandat 4282.909 kb on + strandat 4282.938 kb on - strandat 4282.990 kb on + strand, within yjcHat 4283.005 kb on + strand, within yjcHat 4283.013 kb on - strand, within yjcHat 4283.013 kb on - strand, within yjcHat 4283.013 kb on - strand, within yjcHat 4283.050 kb on + strand, within yjcHat 4283.121 kb on - strand, within yjcHat 4283.212 kb on - strandat 4283.212 kb on - strandat 4283.218 kb on + strandat 4283.224 kb on - strandat 4283.224 kb on - strandat 4283.291 kb on - strandat 4283.315 kb on - strandat 4283.315 kb on - strandat 4283.395 kb on + strandat 4283.395 kb on + strandat 4283.423 kb on + strandat 4283.423 kb on + strandat 4283.514 kb on + strandat 4283.514 kb on + strandat 4283.595 kb on - strandat 4283.678 kb on - strand, within acsat 4283.678 kb on - strand, within acsat 4283.712 kb on + strand, within acsat 4283.749 kb on - strand, within acsat 4283.808 kb on + strand, within acsat 4283.855 kb on + strand, within acsat 4283.855 kb on + strand, within acsat 4283.865 kb on + strand, within acs

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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4,281,018 + -0.3
4,281,018 + -0.6
4,281,024 - -1.5
4,281,027 + -0.7
4,281,046 + -0.6
4,281,138 - +0.1
4,281,223 + +1.0
4,281,230 - -0.7
4,281,230 - +0.6
4,281,232 - +0.1
4,281,243 - +0.0
4,281,252 - -0.0
4,281,252 - +0.1
4,281,252 - +0.6
4,281,255 - -1.5
4,281,262 + -0.6
4,281,262 + -1.4
4,281,262 + -2.1
4,281,267 - -0.9
4,281,270 - -2.1
4,281,281 - -1.9
4,281,281 - -0.7
4,281,282 - -2.1
4,281,296 - -1.1
4,281,296 - -2.2
4,281,296 - -1.5
4,281,296 - -0.1
4,281,307 - -1.4
4,281,308 - -2.4
4,281,308 - -1.2
4,281,318 - +0.3
4,281,321 + -1.0
4,281,334 - -0.6
4,281,334 - +0.1
4,281,341 + -0.9
4,281,349 - -1.6
4,281,349 - -0.8
4,281,349 - +0.1
4,281,349 - -1.1
4,281,349 - -0.1
4,281,349 - -0.5
4,281,412 + -0.9
4,281,420 - -0.4
4,281,420 - -0.9
4,281,503 + actP b4067 0.14 -0.6
4,281,503 + actP b4067 0.14 -1.0
4,281,506 - actP b4067 0.14 -1.9
4,281,573 - actP b4067 0.18 -1.4
4,281,573 - actP b4067 0.18 -1.9
4,281,578 - actP b4067 0.18 -2.5
4,281,756 - actP b4067 0.29 -1.4
4,281,927 - actP b4067 0.39 -2.0
4,281,934 + actP b4067 0.40 -1.0
4,282,003 - actP b4067 0.44 -2.4
4,282,033 - actP b4067 0.46 +0.3
4,282,072 - actP b4067 0.48 -1.7
4,282,094 - actP b4067 0.50 -1.6
4,282,191 - actP b4067 0.55 -0.5
4,282,191 - actP b4067 0.55 -0.7
4,282,215 - actP b4067 0.57 -0.8
4,282,215 - actP b4067 0.57 +0.2
4,282,412 - actP b4067 0.69 -2.3
4,282,531 + actP b4067 0.76 -1.6
4,282,706 - actP b4067 0.87 +0.1
4,282,718 - actP b4067 0.87 -0.9
4,282,718 - actP b4067 0.87 -0.5
4,282,738 - actP b4067 0.89 -1.6
4,282,738 - actP b4067 0.89 -0.7
4,282,740 - actP b4067 0.89 -0.3
4,282,842 + -2.3
4,282,864 - -2.1
4,282,873 - -0.1
4,282,909 + -0.6
4,282,938 - -0.1
4,282,990 + yjcH b4068 0.22 -2.2
4,283,005 + yjcH b4068 0.26 -2.3
4,283,013 - yjcH b4068 0.29 -0.7
4,283,013 - yjcH b4068 0.29 -0.9
4,283,013 - yjcH b4068 0.29 -1.8
4,283,050 + yjcH b4068 0.41 -0.6
4,283,121 - yjcH b4068 0.63 -2.5
4,283,212 - +0.7
4,283,212 - +0.0
4,283,218 + -1.8
4,283,224 - -1.9
4,283,224 - +0.4
4,283,291 - -0.7
4,283,315 - -1.8
4,283,315 - +0.1
4,283,395 + -2.1
4,283,395 + -1.2
4,283,423 + -1.9
4,283,423 + -1.8
4,283,514 + -2.0
4,283,514 + -0.8
4,283,595 - -3.7
4,283,678 - acs b4069 0.12 -1.8
4,283,678 - acs b4069 0.12 -0.5
4,283,712 + acs b4069 0.14 -1.4
4,283,749 - acs b4069 0.16 -2.6
4,283,808 + acs b4069 0.19 -2.0
4,283,855 + acs b4069 0.21 -1.7
4,283,855 + acs b4069 0.21 -1.6
4,283,865 + acs b4069 0.22 -1.5

Or see this region's nucleotide sequence