Strain Fitness in Escherichia coli BW25113 around b3604

Experiment: Glycolic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlldP and lldR overlap by 1 nucleotideslldR and lldD overlap by 4 nucleotides b3603: lldP - (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data), at 3,775,422 to 3,777,077 lldP b3604: lldR - DNA-binding transcriptional repressor (NCBI), at 3,777,077 to 3,777,853 lldR b3605: lldD - L-lactate dehydrogenase, FMN-linked (NCBI), at 3,777,850 to 3,779,040 lldD Position (kb) 3777 3778Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3776.101 kb on - strand, within lldPat 3776.131 kb on + strand, within lldPat 3776.135 kb on + strand, within lldPat 3776.191 kb on + strand, within lldPat 3776.211 kb on - strand, within lldPat 3776.239 kb on + strand, within lldPat 3776.263 kb on + strand, within lldPat 3776.283 kb on + strand, within lldPat 3776.286 kb on - strand, within lldPat 3776.288 kb on + strand, within lldPat 3776.288 kb on + strand, within lldPat 3776.288 kb on + strand, within lldPat 3776.288 kb on + strand, within lldPat 3776.297 kb on - strand, within lldPat 3776.297 kb on - strand, within lldPat 3776.305 kb on + strand, within lldPat 3776.323 kb on - strand, within lldPat 3776.323 kb on - strand, within lldPat 3776.337 kb on + strand, within lldPat 3776.344 kb on + strand, within lldPat 3776.344 kb on + strand, within lldPat 3776.345 kb on - strand, within lldPat 3776.363 kb on + strand, within lldPat 3776.364 kb on - strand, within lldPat 3776.381 kb on + strand, within lldPat 3776.412 kb on + strand, within lldPat 3776.412 kb on + strand, within lldPat 3776.412 kb on + strand, within lldPat 3776.412 kb on + strand, within lldPat 3776.414 kb on + strand, within lldPat 3776.420 kb on - strand, within lldPat 3776.422 kb on - strand, within lldPat 3776.422 kb on - strand, within lldPat 3776.424 kb on - strand, within lldPat 3776.429 kb on - strand, within lldPat 3776.429 kb on - strand, within lldPat 3776.457 kb on - strand, within lldPat 3776.457 kb on - strand, within lldPat 3776.480 kb on + strand, within lldPat 3776.489 kb on + strand, within lldPat 3776.520 kb on + strand, within lldPat 3776.520 kb on + strand, within lldPat 3776.556 kb on + strand, within lldPat 3776.556 kb on + strand, within lldPat 3776.565 kb on - strand, within lldPat 3776.565 kb on - strand, within lldPat 3776.603 kb on + strand, within lldPat 3776.603 kb on + strand, within lldPat 3776.667 kb on - strand, within lldPat 3776.700 kb on - strand, within lldPat 3776.702 kb on + strand, within lldPat 3776.702 kb on + strand, within lldPat 3776.712 kb on - strand, within lldPat 3776.712 kb on - strand, within lldPat 3776.726 kb on + strand, within lldPat 3776.734 kb on + strand, within lldPat 3776.780 kb on - strand, within lldPat 3776.817 kb on - strand, within lldPat 3776.928 kb on - strandat 3776.958 kb on - strandat 3776.963 kb on - strandat 3776.963 kb on - strandat 3776.972 kb on - strandat 3777.017 kb on - strandat 3777.019 kb on + strandat 3777.019 kb on + strandat 3777.024 kb on - strandat 3777.027 kb on + strandat 3777.027 kb on - strandat 3777.049 kb on + strandat 3777.049 kb on + strandat 3777.050 kb on - strandat 3777.050 kb on - strandat 3777.050 kb on - strandat 3777.050 kb on - strandat 3777.083 kb on + strandat 3777.216 kb on - strand, within lldRat 3777.216 kb on - strand, within lldRat 3777.235 kb on - strand, within lldRat 3777.235 kb on - strand, within lldRat 3777.272 kb on - strand, within lldRat 3777.272 kb on - strand, within lldRat 3777.406 kb on - strand, within lldRat 3777.426 kb on - strand, within lldRat 3777.468 kb on + strand, within lldRat 3777.479 kb on + strand, within lldRat 3777.484 kb on + strand, within lldRat 3777.538 kb on + strand, within lldRat 3777.547 kb on - strand, within lldRat 3777.586 kb on + strand, within lldRat 3777.601 kb on - strand, within lldRat 3777.651 kb on + strand, within lldRat 3777.651 kb on + strand, within lldRat 3777.651 kb on + strand, within lldRat 3777.651 kb on + strand, within lldRat 3777.670 kb on + strand, within lldRat 3777.728 kb on + strand, within lldRat 3777.728 kb on + strand, within lldRat 3777.731 kb on - strand, within lldRat 3777.731 kb on - strand, within lldRat 3777.747 kb on - strand, within lldRat 3777.747 kb on - strand, within lldRat 3777.747 kb on - strand, within lldRat 3777.759 kb on + strand, within lldRat 3777.762 kb on - strand, within lldRat 3777.820 kb on + strandat 3777.889 kb on - strandat 3777.937 kb on - strandat 3777.937 kb on - strandat 3777.937 kb on - strandat 3777.939 kb on - strandat 3778.116 kb on + strand, within lldDat 3778.194 kb on + strand, within lldDat 3778.255 kb on + strand, within lldDat 3778.267 kb on + strand, within lldDat 3778.267 kb on + strand, within lldDat 3778.303 kb on - strand, within lldDat 3778.330 kb on - strand, within lldDat 3778.336 kb on - strand, within lldDat 3778.338 kb on + strand, within lldDat 3778.338 kb on + strand, within lldDat 3778.339 kb on + strand, within lldDat 3778.346 kb on - strand, within lldDat 3778.360 kb on + strand, within lldDat 3778.360 kb on + strand, within lldDat 3778.360 kb on + strand, within lldDat 3778.360 kb on + strand, within lldDat 3778.362 kb on + strand, within lldDat 3778.362 kb on + strand, within lldDat 3778.362 kb on - strand, within lldDat 3778.386 kb on + strand, within lldDat 3778.397 kb on + strand, within lldDat 3778.397 kb on + strand, within lldDat 3778.412 kb on - strand, within lldDat 3778.412 kb on - strand, within lldDat 3778.547 kb on - strand, within lldDat 3778.686 kb on + strand, within lldDat 3778.698 kb on + strand, within lldDat 3778.698 kb on + strand, within lldDat 3778.704 kb on - strand, within lldDat 3778.709 kb on + strand, within lldDat 3778.717 kb on + strand, within lldDat 3778.747 kb on + strand, within lldDat 3778.784 kb on + strand, within lldDat 3778.799 kb on + strand, within lldDat 3778.814 kb on + strand, within lldDat 3778.825 kb on + strand, within lldDat 3778.828 kb on + strand, within lldD

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycolic Acid (C)
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3,776,101 - lldP b3603 0.41 -2.1
3,776,131 + lldP b3603 0.43 -0.8
3,776,135 + lldP b3603 0.43 -1.0
3,776,191 + lldP b3603 0.46 -2.1
3,776,211 - lldP b3603 0.48 -1.8
3,776,239 + lldP b3603 0.49 -1.8
3,776,263 + lldP b3603 0.51 -1.4
3,776,283 + lldP b3603 0.52 -2.0
3,776,286 - lldP b3603 0.52 -2.1
3,776,288 + lldP b3603 0.52 -2.3
3,776,288 + lldP b3603 0.52 -1.4
3,776,288 + lldP b3603 0.52 -1.7
3,776,288 + lldP b3603 0.52 +0.2
3,776,297 - lldP b3603 0.53 -0.8
3,776,297 - lldP b3603 0.53 -0.3
3,776,305 + lldP b3603 0.53 -1.8
3,776,323 - lldP b3603 0.54 -1.5
3,776,323 - lldP b3603 0.54 -1.2
3,776,337 + lldP b3603 0.55 -1.1
3,776,344 + lldP b3603 0.56 -1.0
3,776,344 + lldP b3603 0.56 -1.3
3,776,345 - lldP b3603 0.56 -1.8
3,776,363 + lldP b3603 0.57 -0.3
3,776,364 - lldP b3603 0.57 -3.3
3,776,381 + lldP b3603 0.58 -1.5
3,776,412 + lldP b3603 0.60 -2.1
3,776,412 + lldP b3603 0.60 -2.3
3,776,412 + lldP b3603 0.60 -1.9
3,776,412 + lldP b3603 0.60 -2.6
3,776,414 + lldP b3603 0.60 -0.9
3,776,420 - lldP b3603 0.60 -2.0
3,776,422 - lldP b3603 0.60 -2.9
3,776,422 - lldP b3603 0.60 -0.4
3,776,424 - lldP b3603 0.61 -2.5
3,776,429 - lldP b3603 0.61 -0.0
3,776,429 - lldP b3603 0.61 -0.3
3,776,457 - lldP b3603 0.62 -1.9
3,776,457 - lldP b3603 0.62 -0.7
3,776,480 + lldP b3603 0.64 -1.2
3,776,489 + lldP b3603 0.64 -0.8
3,776,520 + lldP b3603 0.66 -1.1
3,776,520 + lldP b3603 0.66 -2.6
3,776,556 + lldP b3603 0.68 -1.6
3,776,556 + lldP b3603 0.68 -1.9
3,776,565 - lldP b3603 0.69 -2.9
3,776,565 - lldP b3603 0.69 -1.6
3,776,603 + lldP b3603 0.71 -1.6
3,776,603 + lldP b3603 0.71 -1.7
3,776,667 - lldP b3603 0.75 -1.6
3,776,700 - lldP b3603 0.77 -2.3
3,776,702 + lldP b3603 0.77 -1.3
3,776,702 + lldP b3603 0.77 -1.4
3,776,712 - lldP b3603 0.78 +0.7
3,776,712 - lldP b3603 0.78 -2.0
3,776,726 + lldP b3603 0.79 -1.7
3,776,734 + lldP b3603 0.79 -1.5
3,776,780 - lldP b3603 0.82 -3.4
3,776,817 - lldP b3603 0.84 -1.5
3,776,928 - -1.4
3,776,958 - -2.0
3,776,963 - -1.6
3,776,963 - -0.8
3,776,972 - -1.3
3,777,017 - -0.2
3,777,019 + -1.5
3,777,019 + -1.9
3,777,024 - -2.4
3,777,027 + -0.9
3,777,027 - -1.8
3,777,049 + -1.6
3,777,049 + -0.1
3,777,050 - -2.2
3,777,050 - -0.6
3,777,050 - +0.1
3,777,050 - -1.1
3,777,083 + -0.8
3,777,216 - lldR b3604 0.18 +0.5
3,777,216 - lldR b3604 0.18 +0.6
3,777,235 - lldR b3604 0.20 -1.1
3,777,235 - lldR b3604 0.20 -0.2
3,777,272 - lldR b3604 0.25 -1.7
3,777,272 - lldR b3604 0.25 -1.3
3,777,406 - lldR b3604 0.42 -0.5
3,777,426 - lldR b3604 0.45 -2.1
3,777,468 + lldR b3604 0.50 +0.2
3,777,479 + lldR b3604 0.52 +0.1
3,777,484 + lldR b3604 0.52 -0.7
3,777,538 + lldR b3604 0.59 -0.8
3,777,547 - lldR b3604 0.60 +0.8
3,777,586 + lldR b3604 0.66 -0.0
3,777,601 - lldR b3604 0.67 +0.0
3,777,651 + lldR b3604 0.74 +0.6
3,777,651 + lldR b3604 0.74 +1.1
3,777,651 + lldR b3604 0.74 -0.1
3,777,651 + lldR b3604 0.74 -0.7
3,777,670 + lldR b3604 0.76 -1.5
3,777,728 + lldR b3604 0.84 -0.7
3,777,728 + lldR b3604 0.84 +0.6
3,777,731 - lldR b3604 0.84 -0.7
3,777,731 - lldR b3604 0.84 +0.2
3,777,747 - lldR b3604 0.86 +0.7
3,777,747 - lldR b3604 0.86 +1.1
3,777,747 - lldR b3604 0.86 -0.5
3,777,759 + lldR b3604 0.88 -1.5
3,777,762 - lldR b3604 0.88 -0.3
3,777,820 + -0.3
3,777,889 - -0.7
3,777,937 - +1.5
3,777,937 - +0.6
3,777,937 - +1.9
3,777,939 - -0.4
3,778,116 + lldD b3605 0.22 +1.0
3,778,194 + lldD b3605 0.29 +1.1
3,778,255 + lldD b3605 0.34 -0.6
3,778,267 + lldD b3605 0.35 +0.3
3,778,267 + lldD b3605 0.35 +0.5
3,778,303 - lldD b3605 0.38 -1.3
3,778,330 - lldD b3605 0.40 +0.1
3,778,336 - lldD b3605 0.41 -0.6
3,778,338 + lldD b3605 0.41 -0.3
3,778,338 + lldD b3605 0.41 +1.0
3,778,339 + lldD b3605 0.41 -0.7
3,778,346 - lldD b3605 0.42 +0.2
3,778,360 + lldD b3605 0.43 +0.3
3,778,360 + lldD b3605 0.43 +0.3
3,778,360 + lldD b3605 0.43 +0.9
3,778,360 + lldD b3605 0.43 +0.5
3,778,362 + lldD b3605 0.43 -0.3
3,778,362 + lldD b3605 0.43 -1.1
3,778,362 - lldD b3605 0.43 +0.6
3,778,386 + lldD b3605 0.45 +0.7
3,778,397 + lldD b3605 0.46 +4.3
3,778,397 + lldD b3605 0.46 +4.1
3,778,412 - lldD b3605 0.47 -0.1
3,778,412 - lldD b3605 0.47 +1.1
3,778,547 - lldD b3605 0.59 +0.7
3,778,686 + lldD b3605 0.70 -0.4
3,778,698 + lldD b3605 0.71 +0.1
3,778,698 + lldD b3605 0.71 +0.9
3,778,704 - lldD b3605 0.72 +1.0
3,778,709 + lldD b3605 0.72 +0.1
3,778,717 + lldD b3605 0.73 -1.1
3,778,747 + lldD b3605 0.75 -0.6
3,778,784 + lldD b3605 0.78 -1.8
3,778,799 + lldD b3605 0.80 +0.1
3,778,814 + lldD b3605 0.81 +0.0
3,778,825 + lldD b3605 0.82 -0.2
3,778,828 + lldD b3605 0.82 -0.5

Or see this region's nucleotide sequence