Experiment: Thallium(I) acetate 0.008 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1868 and PfGW456L13_1869 are separated by 11 nucleotides PfGW456L13_1869 and PfGW456L13_1870 are separated by 432 nucleotides PfGW456L13_1870 and PfGW456L13_1871 are separated by 218 nucleotides PfGW456L13_1871 and PfGW456L13_1872 are separated by 63 nucleotides
PfGW456L13_1868 - Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) , at 2,053,835 to 2,056,687
_1868
PfGW456L13_1869 - glycine cleavage system H protein (EC 1.4.1.27) (from data) , at 2,056,699 to 2,057,082
_1869
PfGW456L13_1870 - Sigma-54 dependent transcriptional regulator/sensory box protein, at 2,057,515 to 2,059,023
_1870
PfGW456L13_1871 - Acetyl-CoA carboxylase alpha subunit, at 2,059,242 to 2,059,604
_1871
PfGW456L13_1872 - Carbamate kinase (EC 2.7.2.2), at 2,059,668 to 2,060,597
_1872
Position (kb)
2057
2058
2059
2060 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2056.666 kb on + strand at 2056.733 kb on + strand at 2056.886 kb on + strand, within PfGW456L13_1869 at 2056.886 kb on + strand, within PfGW456L13_1869 at 2056.886 kb on + strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.887 kb on - strand, within PfGW456L13_1869 at 2056.943 kb on + strand, within PfGW456L13_1869 at 2057.064 kb on + strand at 2057.064 kb on + strand at 2057.065 kb on - strand at 2057.092 kb on + strand at 2057.093 kb on - strand at 2057.093 kb on - strand at 2057.093 kb on - strand at 2057.148 kb on - strand at 2057.158 kb on - strand at 2057.158 kb on - strand at 2057.158 kb on - strand at 2057.161 kb on + strand at 2057.161 kb on + strand at 2057.161 kb on + strand at 2057.161 kb on + strand at 2057.188 kb on + strand at 2057.188 kb on + strand at 2057.262 kb on + strand at 2057.262 kb on + strand at 2057.262 kb on + strand at 2057.262 kb on + strand at 2057.263 kb on - strand at 2057.263 kb on - strand at 2057.263 kb on - strand at 2057.263 kb on - strand at 2057.263 kb on - strand at 2057.264 kb on + strand at 2057.264 kb on + strand at 2057.264 kb on + strand at 2057.264 kb on + strand at 2057.264 kb on + strand at 2057.265 kb on - strand at 2057.265 kb on - strand at 2057.265 kb on - strand at 2057.265 kb on - strand at 2057.275 kb on + strand at 2057.276 kb on - strand at 2057.276 kb on - strand at 2057.436 kb on + strand at 2057.436 kb on + strand at 2057.437 kb on - strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.461 kb on + strand at 2057.462 kb on - strand at 2057.462 kb on - strand at 2057.462 kb on - strand at 2057.462 kb on - strand at 2057.462 kb on - strand at 2057.537 kb on + strand at 2057.537 kb on + strand at 2057.609 kb on + strand at 2057.609 kb on + strand at 2057.618 kb on + strand at 2057.828 kb on + strand, within PfGW456L13_1870 at 2057.891 kb on + strand, within PfGW456L13_1870 at 2057.892 kb on - strand, within PfGW456L13_1870 at 2057.966 kb on + strand, within PfGW456L13_1870 at 2057.966 kb on + strand, within PfGW456L13_1870 at 2057.967 kb on - strand, within PfGW456L13_1870 at 2058.040 kb on + strand, within PfGW456L13_1870 at 2058.040 kb on + strand, within PfGW456L13_1870 at 2058.040 kb on + strand, within PfGW456L13_1870 at 2058.040 kb on + strand, within PfGW456L13_1870 at 2058.041 kb on - strand, within PfGW456L13_1870 at 2058.123 kb on - strand, within PfGW456L13_1870 at 2058.367 kb on + strand, within PfGW456L13_1870 at 2058.368 kb on - strand, within PfGW456L13_1870 at 2058.515 kb on + strand, within PfGW456L13_1870 at 2058.515 kb on + strand, within PfGW456L13_1870 at 2058.516 kb on - strand, within PfGW456L13_1870 at 2058.516 kb on - strand, within PfGW456L13_1870 at 2058.690 kb on - strand, within PfGW456L13_1870 at 2058.906 kb on + strand at 2058.906 kb on + strand at 2058.907 kb on - strand at 2058.907 kb on - strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.908 kb on + strand at 2058.909 kb on - strand at 2059.018 kb on - strand at 2059.062 kb on + strand at 2059.062 kb on + strand at 2059.062 kb on + strand at 2059.062 kb on + strand at 2059.062 kb on + strand at 2059.062 kb on + strand at 2059.062 kb on + strand at 2059.063 kb on - strand at 2059.063 kb on - strand at 2059.063 kb on - strand at 2059.079 kb on + strand at 2059.189 kb on - strand at 2059.293 kb on + strand, within PfGW456L13_1871 at 2059.322 kb on - strand, within PfGW456L13_1871 at 2059.349 kb on + strand, within PfGW456L13_1871 at 2059.350 kb on - strand, within PfGW456L13_1871 at 2059.408 kb on + strand, within PfGW456L13_1871 at 2059.408 kb on + strand at 2059.409 kb on - strand, within PfGW456L13_1871 at 2059.409 kb on - strand, within PfGW456L13_1871 at 2059.519 kb on + strand, within PfGW456L13_1871 at 2059.519 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.537 kb on + strand, within PfGW456L13_1871 at 2059.538 kb on - strand, within PfGW456L13_1871 at 2059.538 kb on - strand, within PfGW456L13_1871 at 2059.538 kb on - strand, within PfGW456L13_1871 at 2059.538 kb on - strand, within PfGW456L13_1871 at 2059.669 kb on + strand at 2059.669 kb on + strand at 2059.670 kb on - strand at 2059.675 kb on + strand at 2059.675 kb on + strand at 2059.676 kb on - strand at 2059.676 kb on - strand at 2059.676 kb on - strand at 2059.676 kb on - strand at 2059.676 kb on - strand at 2059.697 kb on + strand at 2059.698 kb on - strand at 2059.709 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml remove 2,056,666 + -0.4 2,056,733 + +0.0 2,056,886 + PfGW456L13_1869 0.49 -0.7 2,056,886 + PfGW456L13_1869 0.49 -0.5 2,056,886 + PfGW456L13_1869 0.49 -1.2 2,056,887 - PfGW456L13_1869 0.49 -1.3 2,056,887 - PfGW456L13_1869 0.49 +0.0 2,056,887 - PfGW456L13_1869 0.49 -2.4 2,056,887 - PfGW456L13_1869 0.49 +0.3 2,056,887 - PfGW456L13_1869 0.49 +0.6 2,056,887 - PfGW456L13_1869 0.49 +0.8 2,056,887 - PfGW456L13_1869 0.49 -0.8 2,056,887 - PfGW456L13_1869 0.49 +0.8 2,056,887 - PfGW456L13_1869 0.49 -1.0 2,056,943 + PfGW456L13_1869 0.64 -0.8 2,057,064 + +0.4 2,057,064 + +0.2 2,057,065 - +0.3 2,057,092 + +0.2 2,057,093 - -0.5 2,057,093 - +0.4 2,057,093 - +0.4 2,057,148 - -0.5 2,057,158 - -0.2 2,057,158 - -0.5 2,057,158 - -0.4 2,057,161 + +0.0 2,057,161 + -0.8 2,057,161 + +0.4 2,057,161 + +0.2 2,057,188 + -0.3 2,057,188 + -0.4 2,057,262 + -0.3 2,057,262 + +0.5 2,057,262 + +0.6 2,057,262 + +0.3 2,057,263 - -0.3 2,057,263 - -1.6 2,057,263 - -1.2 2,057,263 - +0.5 2,057,263 - +0.2 2,057,264 + +1.5 2,057,264 + -0.0 2,057,264 + -0.3 2,057,264 + +0.0 2,057,264 + +0.3 2,057,265 - +0.7 2,057,265 - -0.1 2,057,265 - -0.1 2,057,265 - -0.1 2,057,275 + -0.3 2,057,276 - +0.8 2,057,276 - +0.5 2,057,436 + -0.9 2,057,436 + -1.1 2,057,437 - +1.5 2,057,461 + -0.9 2,057,461 + +0.3 2,057,461 + +0.8 2,057,461 + -0.6 2,057,461 + +0.2 2,057,461 + +0.2 2,057,461 + -0.3 2,057,461 + +0.5 2,057,461 + -0.7 2,057,462 - +0.1 2,057,462 - +0.7 2,057,462 - -0.8 2,057,462 - +0.1 2,057,462 - +1.4 2,057,537 + -0.9 2,057,537 + +0.2 2,057,609 + -0.5 2,057,609 + -0.3 2,057,618 + -0.2 2,057,828 + PfGW456L13_1870 0.21 -1.2 2,057,891 + PfGW456L13_1870 0.25 +0.5 2,057,892 - PfGW456L13_1870 0.25 -0.1 2,057,966 + PfGW456L13_1870 0.30 +0.4 2,057,966 + PfGW456L13_1870 0.30 -0.8 2,057,967 - PfGW456L13_1870 0.30 -0.4 2,058,040 + PfGW456L13_1870 0.35 -0.1 2,058,040 + PfGW456L13_1870 0.35 +0.8 2,058,040 + PfGW456L13_1870 0.35 +0.5 2,058,040 + PfGW456L13_1870 0.35 +0.6 2,058,041 - PfGW456L13_1870 0.35 -0.2 2,058,123 - PfGW456L13_1870 0.40 +0.4 2,058,367 + PfGW456L13_1870 0.56 -0.1 2,058,368 - PfGW456L13_1870 0.57 +0.4 2,058,515 + PfGW456L13_1870 0.66 +0.6 2,058,515 + PfGW456L13_1870 0.66 +0.3 2,058,516 - PfGW456L13_1870 0.66 +0.4 2,058,516 - PfGW456L13_1870 0.66 -0.8 2,058,690 - PfGW456L13_1870 0.78 +0.1 2,058,906 + -0.2 2,058,906 + -0.2 2,058,907 - -0.8 2,058,907 - -0.3 2,058,908 + +0.8 2,058,908 + +0.2 2,058,908 + +0.3 2,058,908 + -0.2 2,058,908 + +0.5 2,058,908 + -0.0 2,058,908 + -0.6 2,058,908 + +0.1 2,058,908 + +0.2 2,058,908 + -0.3 2,058,909 - -0.2 2,059,018 - -2.9 2,059,062 + +0.3 2,059,062 + +0.1 2,059,062 + -0.3 2,059,062 + -1.3 2,059,062 + -0.4 2,059,062 + -1.2 2,059,062 + +0.1 2,059,063 - -0.5 2,059,063 - -0.0 2,059,063 - +0.2 2,059,079 + -0.9 2,059,189 - +0.6 2,059,293 + PfGW456L13_1871 0.14 -0.2 2,059,322 - PfGW456L13_1871 0.22 +0.1 2,059,349 + PfGW456L13_1871 0.29 -0.6 2,059,350 - PfGW456L13_1871 0.30 -0.8 2,059,408 + PfGW456L13_1871 0.46 -0.5 2,059,408 + +1.3 2,059,409 - PfGW456L13_1871 0.46 -0.6 2,059,409 - PfGW456L13_1871 0.46 +0.6 2,059,519 + PfGW456L13_1871 0.76 +0.2 2,059,519 + PfGW456L13_1871 0.76 -0.6 2,059,537 + PfGW456L13_1871 0.81 -0.1 2,059,537 + PfGW456L13_1871 0.81 +0.8 2,059,537 + PfGW456L13_1871 0.81 +0.9 2,059,537 + PfGW456L13_1871 0.81 -0.5 2,059,537 + PfGW456L13_1871 0.81 +0.1 2,059,537 + PfGW456L13_1871 0.81 -0.5 2,059,537 + PfGW456L13_1871 0.81 -0.1 2,059,537 + PfGW456L13_1871 0.81 +0.1 2,059,538 - PfGW456L13_1871 0.82 -0.2 2,059,538 - PfGW456L13_1871 0.82 -0.4 2,059,538 - PfGW456L13_1871 0.82 -0.8 2,059,538 - PfGW456L13_1871 0.82 -0.5 2,059,669 + +0.8 2,059,669 + +0.2 2,059,670 - -0.6 2,059,675 + -0.4 2,059,675 + -1.3 2,059,676 - +0.6 2,059,676 - +0.6 2,059,676 - -0.4 2,059,676 - +0.3 2,059,676 - -0.3 2,059,697 + +0.4 2,059,698 - +0.3 2,059,709 + -0.3
Or see this region's nucleotide sequence