Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1280

Experiment: Thallium(I) acetate 0.008 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1279 and PfGW456L13_1280 are separated by 42 nucleotidesPfGW456L13_1280 and PfGW456L13_1281 are separated by 237 nucleotides PfGW456L13_1279 - DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6), at 1,417,010 to 1,418,011 _1279 PfGW456L13_1280 - LSU ribosomal protein L17p, at 1,418,054 to 1,418,440 _1280 PfGW456L13_1281 - Catalase (EC 1.11.1.6), at 1,418,678 to 1,420,132 _1281 Position (kb) 1418 1419Strain fitness (log2 ratio) -2 -1 0 1at 1418.494 kb on - strandat 1418.494 kb on - strandat 1418.511 kb on + strandat 1418.512 kb on - strandat 1418.512 kb on - strandat 1418.512 kb on - strandat 1418.541 kb on + strandat 1418.541 kb on + strandat 1418.541 kb on + strandat 1418.542 kb on - strandat 1418.542 kb on - strandat 1418.542 kb on - strandat 1418.542 kb on - strandat 1418.610 kb on - strandat 1418.610 kb on - strandat 1418.623 kb on - strandat 1418.699 kb on - strandat 1418.861 kb on + strand, within PfGW456L13_1281at 1418.866 kb on + strand, within PfGW456L13_1281at 1418.867 kb on - strand, within PfGW456L13_1281at 1418.897 kb on + strand, within PfGW456L13_1281at 1418.897 kb on + strand, within PfGW456L13_1281at 1418.898 kb on - strand, within PfGW456L13_1281at 1418.898 kb on - strand, within PfGW456L13_1281at 1419.026 kb on + strand, within PfGW456L13_1281at 1419.275 kb on + strand, within PfGW456L13_1281at 1419.275 kb on + strand, within PfGW456L13_1281at 1419.275 kb on + strand, within PfGW456L13_1281at 1419.275 kb on + strand, within PfGW456L13_1281at 1419.276 kb on - strand, within PfGW456L13_1281at 1419.276 kb on - strand, within PfGW456L13_1281at 1419.323 kb on + strand, within PfGW456L13_1281at 1419.323 kb on + strand, within PfGW456L13_1281at 1419.324 kb on - strand, within PfGW456L13_1281at 1419.324 kb on - strand, within PfGW456L13_1281

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.008 mg/ml
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1,418,494 - +0.4
1,418,494 - +0.4
1,418,511 + +0.6
1,418,512 - -0.6
1,418,512 - +0.5
1,418,512 - -1.1
1,418,541 + +0.5
1,418,541 + +0.9
1,418,541 + -0.1
1,418,542 - -0.5
1,418,542 - +0.4
1,418,542 - -0.1
1,418,542 - -0.5
1,418,610 - -0.6
1,418,610 - +0.0
1,418,623 - -0.6
1,418,699 - -0.1
1,418,861 + PfGW456L13_1281 0.13 -2.4
1,418,866 + PfGW456L13_1281 0.13 -2.4
1,418,867 - PfGW456L13_1281 0.13 -0.6
1,418,897 + PfGW456L13_1281 0.15 +0.3
1,418,897 + PfGW456L13_1281 0.15 +0.5
1,418,898 - PfGW456L13_1281 0.15 +0.3
1,418,898 - PfGW456L13_1281 0.15 +0.8
1,419,026 + PfGW456L13_1281 0.24 -2.2
1,419,275 + PfGW456L13_1281 0.41 +0.7
1,419,275 + PfGW456L13_1281 0.41 +0.0
1,419,275 + PfGW456L13_1281 0.41 -0.3
1,419,275 + PfGW456L13_1281 0.41 +0.4
1,419,276 - PfGW456L13_1281 0.41 -0.3
1,419,276 - PfGW456L13_1281 0.41 -0.3
1,419,323 + PfGW456L13_1281 0.44 -1.8
1,419,323 + PfGW456L13_1281 0.44 -0.2
1,419,324 - PfGW456L13_1281 0.44 -1.0
1,419,324 - PfGW456L13_1281 0.44 -0.4

Or see this region's nucleotide sequence