Strain Fitness in Pseudomonas sp. S08-1 around OH686_22835

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_22830 and OH686_22835 are separated by 185 nucleotidesOH686_22835 and OH686_22840 are separated by 224 nucleotides OH686_22830: OH686_22830 - Gamma-glutamyl-putrescine oxidase , at 4,630,892 to 4,632,175 _22830 OH686_22835: OH686_22835 - tRNA-Val, at 4,632,361 to 4,632,437 _22835 OH686_22840: OH686_22840 - threonine--tRNA ligase, at 4,632,662 to 4,634,584 _22840 Position (kb) 4632 4633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4631.452 kb on + strand, within OH686_22830at 4631.460 kb on + strand, within OH686_22830at 4631.460 kb on + strand, within OH686_22830at 4631.460 kb on + strand, within OH686_22830at 4631.460 kb on + strand, within OH686_22830at 4631.461 kb on - strand, within OH686_22830at 4631.461 kb on - strand, within OH686_22830at 4631.461 kb on - strand, within OH686_22830at 4631.566 kb on - strand, within OH686_22830at 4631.566 kb on - strand, within OH686_22830at 4631.566 kb on - strand, within OH686_22830at 4631.566 kb on - strand, within OH686_22830at 4631.566 kb on - strand, within OH686_22830at 4631.629 kb on + strand, within OH686_22830at 4631.630 kb on - strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.664 kb on + strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.665 kb on - strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.829 kb on + strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.830 kb on - strand, within OH686_22830at 4631.840 kb on - strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.938 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.940 kb on + strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.941 kb on - strand, within OH686_22830at 4631.966 kb on - strand, within OH686_22830at 4632.060 kb on + strandat 4632.060 kb on + strandat 4632.060 kb on + strandat 4632.061 kb on - strandat 4632.144 kb on + strandat 4632.144 kb on + strandat 4632.144 kb on + strandat 4632.144 kb on + strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.145 kb on - strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.147 kb on + strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.148 kb on - strandat 4632.175 kb on + strandat 4632.176 kb on - strandat 4632.176 kb on - strandat 4632.185 kb on + strandat 4632.186 kb on - strandat 4632.186 kb on - strandat 4632.305 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.454 kb on + strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.455 kb on - strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.458 kb on + strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.459 kb on - strandat 4632.472 kb on + strandat 4632.473 kb on - strandat 4632.473 kb on - strandat 4632.473 kb on - strandat 4632.523 kb on + strandat 4632.523 kb on + strandat 4632.523 kb on + strandat 4632.523 kb on + strandat 4632.523 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,631,452 + OH686_22830 0.44 +0.1
4,631,460 + OH686_22830 0.44 -1.1
4,631,460 + OH686_22830 0.44 -0.6
4,631,460 + OH686_22830 0.44 -0.4
4,631,460 + OH686_22830 0.44 -0.5
4,631,461 - OH686_22830 0.44 +0.3
4,631,461 - OH686_22830 0.44 +0.2
4,631,461 - OH686_22830 0.44 -0.7
4,631,566 - OH686_22830 0.52 +0.4
4,631,566 - OH686_22830 0.52 +1.2
4,631,566 - OH686_22830 0.52 +1.5
4,631,566 - OH686_22830 0.52 +0.4
4,631,566 - OH686_22830 0.52 +0.6
4,631,629 + OH686_22830 0.57 -0.7
4,631,630 - OH686_22830 0.57 -0.7
4,631,664 + OH686_22830 0.60 +0.5
4,631,664 + OH686_22830 0.60 -0.7
4,631,664 + OH686_22830 0.60 +0.1
4,631,664 + OH686_22830 0.60 +0.2
4,631,664 + OH686_22830 0.60 +0.1
4,631,664 + OH686_22830 0.60 -1.7
4,631,664 + OH686_22830 0.60 -0.2
4,631,664 + OH686_22830 0.60 -1.4
4,631,664 + OH686_22830 0.60 -0.4
4,631,664 + OH686_22830 0.60 +0.8
4,631,664 + OH686_22830 0.60 +0.2
4,631,664 + OH686_22830 0.60 +0.2
4,631,664 + OH686_22830 0.60 +0.5
4,631,665 - OH686_22830 0.60 -0.5
4,631,665 - OH686_22830 0.60 -0.8
4,631,665 - OH686_22830 0.60 +0.5
4,631,665 - OH686_22830 0.60 +0.0
4,631,665 - OH686_22830 0.60 +1.0
4,631,665 - OH686_22830 0.60 -0.2
4,631,665 - OH686_22830 0.60 +0.9
4,631,665 - OH686_22830 0.60 +0.3
4,631,665 - OH686_22830 0.60 -0.2
4,631,665 - OH686_22830 0.60 -0.0
4,631,665 - OH686_22830 0.60 +0.3
4,631,665 - OH686_22830 0.60 -1.0
4,631,665 - OH686_22830 0.60 -0.3
4,631,665 - OH686_22830 0.60 +0.6
4,631,665 - OH686_22830 0.60 -1.1
4,631,665 - OH686_22830 0.60 +0.5
4,631,665 - OH686_22830 0.60 -0.9
4,631,829 + OH686_22830 0.73 -0.7
4,631,829 + OH686_22830 0.73 +0.3
4,631,829 + OH686_22830 0.73 -0.2
4,631,829 + OH686_22830 0.73 +0.5
4,631,829 + OH686_22830 0.73 +0.7
4,631,829 + OH686_22830 0.73 +0.4
4,631,830 - OH686_22830 0.73 -0.4
4,631,830 - OH686_22830 0.73 -1.2
4,631,830 - OH686_22830 0.73 -0.2
4,631,830 - OH686_22830 0.73 +1.3
4,631,830 - OH686_22830 0.73 +0.4
4,631,830 - OH686_22830 0.73 +0.8
4,631,830 - OH686_22830 0.73 -0.6
4,631,840 - OH686_22830 0.74 +0.0
4,631,938 + OH686_22830 0.81 +0.2
4,631,938 + OH686_22830 0.81 +0.5
4,631,938 + OH686_22830 0.81 -0.6
4,631,938 + OH686_22830 0.81 -0.1
4,631,938 + OH686_22830 0.81 -0.5
4,631,940 + OH686_22830 0.82 +0.1
4,631,940 + OH686_22830 0.82 +0.2
4,631,940 + OH686_22830 0.82 -0.1
4,631,940 + OH686_22830 0.82 -0.1
4,631,940 + OH686_22830 0.82 +0.7
4,631,940 + OH686_22830 0.82 -0.3
4,631,940 + OH686_22830 0.82 -0.4
4,631,940 + OH686_22830 0.82 -1.9
4,631,940 + OH686_22830 0.82 -0.7
4,631,940 + OH686_22830 0.82 +0.7
4,631,940 + OH686_22830 0.82 -1.5
4,631,940 + OH686_22830 0.82 +0.7
4,631,940 + OH686_22830 0.82 -0.4
4,631,940 + OH686_22830 0.82 -1.0
4,631,941 - OH686_22830 0.82 +0.5
4,631,941 - OH686_22830 0.82 -0.2
4,631,941 - OH686_22830 0.82 -0.3
4,631,941 - OH686_22830 0.82 -0.5
4,631,941 - OH686_22830 0.82 -0.6
4,631,941 - OH686_22830 0.82 +0.3
4,631,941 - OH686_22830 0.82 -2.3
4,631,941 - OH686_22830 0.82 +1.2
4,631,941 - OH686_22830 0.82 +0.2
4,631,941 - OH686_22830 0.82 +0.7
4,631,941 - OH686_22830 0.82 -0.2
4,631,941 - OH686_22830 0.82 +0.9
4,631,941 - OH686_22830 0.82 -0.1
4,631,941 - OH686_22830 0.82 +0.9
4,631,941 - OH686_22830 0.82 +0.4
4,631,941 - OH686_22830 0.82 -0.7
4,631,966 - OH686_22830 0.84 +0.1
4,632,060 + -0.6
4,632,060 + -0.9
4,632,060 + -0.6
4,632,061 - -0.8
4,632,144 + -0.6
4,632,144 + -0.7
4,632,144 + +0.4
4,632,144 + -2.8
4,632,145 - -0.1
4,632,145 - -0.3
4,632,145 - -0.5
4,632,145 - +0.8
4,632,145 - -0.6
4,632,147 + +0.9
4,632,147 + +1.1
4,632,147 + -0.7
4,632,147 + +0.3
4,632,147 + -0.8
4,632,147 + +0.8
4,632,148 - -0.3
4,632,148 - -0.7
4,632,148 - -0.1
4,632,148 - -0.2
4,632,148 - -0.5
4,632,175 + +1.2
4,632,176 - -0.5
4,632,176 - -0.7
4,632,185 + +1.8
4,632,186 - -0.4
4,632,186 - -1.3
4,632,305 + -0.6
4,632,454 + -0.3
4,632,454 + -0.5
4,632,454 + +0.3
4,632,454 + -0.6
4,632,454 + +1.3
4,632,455 - +0.5
4,632,455 - -1.1
4,632,455 - +0.2
4,632,455 - -0.6
4,632,455 - +1.2
4,632,458 + +0.0
4,632,458 + +0.2
4,632,458 + -1.6
4,632,458 + -0.1
4,632,458 + +0.4
4,632,458 + +0.8
4,632,458 + -2.0
4,632,458 + -0.6
4,632,458 + +0.4
4,632,458 + +0.5
4,632,458 + +0.2
4,632,458 + -1.9
4,632,458 + +0.4
4,632,458 + +0.9
4,632,458 + -0.4
4,632,458 + -1.1
4,632,458 + -0.7
4,632,458 + -0.8
4,632,458 + -0.7
4,632,458 + +1.5
4,632,458 + -0.1
4,632,459 - +0.3
4,632,459 - -0.8
4,632,459 - -0.6
4,632,459 - +0.4
4,632,459 - +0.6
4,632,459 - -0.4
4,632,459 - +1.2
4,632,459 - +1.0
4,632,459 - -0.7
4,632,459 - +0.6
4,632,459 - +0.0
4,632,459 - -0.3
4,632,459 - +0.2
4,632,472 + +0.2
4,632,473 - +0.3
4,632,473 - -0.1
4,632,473 - +0.3
4,632,523 + -0.4
4,632,523 + -0.2
4,632,523 + +0.7
4,632,523 + -0.2
4,632,523 + +0.6

Or see this region's nucleotide sequence